Pairwise Alignments

Query, 343 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., Ribose operon repressor from Pseudomonas fluorescens FW300-N2E2

 Score =  127 bits (320), Expect = 3e-34
 Identities = 96/329 (29%), Positives = 161/329 (48%), Gaps = 7/329 (2%)

Query: 16  TSKDVAKLAGVSQSTVSRVFVPGSSVSEKTKQKVFEAAKVLNYRPNAFARSLTTNESKLI 75
           T KDVA LAG+S +TVS V      VSE+ + KV  A + L+Y P+A ARSL    +  I
Sbjct: 3   TIKDVAALAGISYTTVSHVVNKTRPVSEEVRLKVEAAIERLDYVPSAVARSLKAKTTATI 62

Query: 76  GLVFPDADYPIHMKTLQLISSELQQVGYSAVLIPWQVDEQDNHS-IPNIFQYRVDGVIAA 134
           GL+ P++  P   +  + I    ++ GY  +L     +     S +  + + R+DG+I A
Sbjct: 63  GLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNPDKQRSYLRVLLEKRIDGLIFA 122

Query: 135 SATFNKTLYEECEEFNIPIVQYARVVEGTKSSYVISDNYEAGRQAAQLLHQAGAQSAVYL 194
           SA  +  L E       P+V   R +EG  +  V  D+      A + L + G +   ++
Sbjct: 123 SAGGDVGLAEGLSNVRTPMVIVDRGLEGVDADLVRIDHEYGAYLATRHLLELGHRDIAFI 182

Query: 195 TGEVPTFTNDERQQGFCSEFKSLTGFTPPV---VKATYDYTGSLDTIRRLIADSSRPAAI 251
            G   T     R  G+C   K   G   PV   +++ +  TG      +L+     P+AI
Sbjct: 183 GGPANTSVAQMRLAGYCRALKE-AGIELPVERMLESDFTSTGGYRAAAQLLVQQP-PSAI 240

Query: 252 FCATDNLAMAVMDIARFEFSLRIPDDIQVIGFDNIPQTEWLSYQLTTFAQDFKRLARESV 311
           F A D + + V+  A  E ++R+P ++ VIGFD+I  + ++   LTT  Q   +L   + 
Sbjct: 241 FAANDMIGIGVLRAAA-ERNVRVPSELSVIGFDDIQMSRYVYPALTTVGQSILQLGEMAA 299

Query: 312 KIIVDQITTRNQSLVKLMVPTKLIQRKST 340
           ++++ +I T   +  + +V   ++ R+ST
Sbjct: 300 EVLLRRIATPGLATEQRIVTPSIVLREST 328