Pairwise Alignments

Query, 343 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., periplasmic binding protein/LacI transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  115 bits (288), Expect = 2e-30
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 6/307 (1%)

Query: 16  TSKDVAKLAGVSQSTVSRVFVPGSSVSEKTKQKVFEAAKVLNYRPNAFARSLTTNESKLI 75
           T  DV+ LAGVS +TVSRV      VS+KT+QKV +A   L+YRPN  A+SL +N S  I
Sbjct: 3   TIYDVSFLAGVSLATVSRVVNNTGKVSDKTRQKVHDAMAKLDYRPNTIAQSLASNRSNSI 62

Query: 76  GLVFPDADYPIHMKTLQLISSELQQVGYSAVLIPWQVD-EQDNHSIPNIFQYRVDGVIA- 133
           G++    D P +   ++ + S L+      ++     D  Q+   +  +     D +I  
Sbjct: 63  GVLVSQLDGPFYGPMMREVESALRAANKHVIIAAGHSDAAQEKDGVEFLLSRGCDALIVD 122

Query: 134 ASATFNKTLYEECEEFNIPIVQYARVVEGTKSSYVISDNYEAGRQAAQLLHQAGAQSAVY 193
           A    N  L E C+    P+V   R V+G     V  +N + G  A++ + + G +   Y
Sbjct: 123 AEILSNGYLVELCQG-KTPVVLINRHVDGIDERCVHLNNLQGGLLASRHVLEKGHKQIAY 181

Query: 194 LTGEVPTFTNDERQQGFCSEF--KSLTGFTPPVVKATYDYTGSLDTIRRLIADSSRPAAI 251
           ++G +      ER +G       + +        +  +   G  + + +L++      A+
Sbjct: 182 ISGPLFKLDARERLEGHRQALAEQGIAFDENLFYEGDFREEGGYEAMAQLLSRGRDFTAV 241

Query: 252 FCATDNLAMAVMDIARFEFSLRIPDDIQVIGFDNIPQTEWLSYQLTTFAQDFKRLARESV 311
            CA D +A   +     E  LR+P+DI  +GFDNIP   ++S +LTT     + + R + 
Sbjct: 242 VCANDQMASGAI-AQCLERGLRVPEDISFVGFDNIPFPRYISPKLTTVCNPIQDMGRMAA 300

Query: 312 KIIVDQI 318
             ++ ++
Sbjct: 301 HWVLREV 307