Pairwise Alignments

Query, 343 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., LacI family transcription regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  142 bits (359), Expect = 9e-39
 Identities = 99/327 (30%), Positives = 167/327 (51%), Gaps = 5/327 (1%)

Query: 18  KDVAKLAGVSQSTVSRVFVPGSSVSEKTKQKVFEAAKVLNYRPNAFARSLTTNESKLIGL 77
           K V++LAGVS +TVSR       VSE+T+ KV +A K   YRPN  A S+ T +S  I +
Sbjct: 5   KKVSELAGVSTATVSRTLKSPERVSEQTRAKVMQAVKQAGYRPNWMATSVKTGKSNAIVV 64

Query: 78  VFPDADYPIHMKTLQLISSELQQVGYSAVLIPWQVDEQDNHSIPN-IFQYRVDGVIAASA 136
           + P+   P  M+ ++ I    Q+ GY  +L   Q  +   H   + +   R DG+I    
Sbjct: 65  LVPNLVNPFFMRIIEGIEQAAQEKGYCVLLGDTQGLQAREHEYASMVLTNRADGLIQLDH 124

Query: 137 TFNKTLYEECEEFNIPIVQYARVVEG-TKSSYVISDNYEAGRQAAQLLHQAGAQSAVYLT 195
           +F  +  +      IP+V     +EG  K  ++  DN+ AGR  A  L   G +    + 
Sbjct: 125 SFPFSDNDADLAATIPMVSVCERIEGDRKYPFIELDNHAAGRALAHHLIGFGHKHFGIIA 184

Query: 196 GEVPTFTNDERQQGFCS--EFKSLTGFTPPVVKATYDYTGSLDTIRRLIADSSRPAAIFC 253
           G+  +  + +R  G  S  + + +      +V ++Y     ++  R L++ + RP+AIFC
Sbjct: 185 GQRRSQIHHDRLTGIMSVLQGEGIDFKEDMLVGSSYSIETGIEGARELLSRNPRPSAIFC 244

Query: 254 ATDNLAMAVMDIARFEFSLRIPDDIQVIGFDNIPQTEWLSYQLTTFAQDFKRLARESVKI 313
             D++A+  M   + +  L+IPDDI V GFDN+  + ++   LTT  Q    + R +V++
Sbjct: 245 FNDDIAIGAMFEIKSQ-GLKIPDDISVTGFDNVKVSAYMDPPLTTIDQPAYEMGRNAVEV 303

Query: 314 IVDQITTRNQSLVKLMVPTKLIQRKST 340
           +V QI     +  ++++P  L++R ST
Sbjct: 304 LVQQINRLPLARSRVIMPFHLLERGST 330