Pairwise Alignments

Query, 513 a.a., sodium:solute symporter from Vibrio cholerae E7946 ATCC 55056

Subject, 494 a.a., sodium/proline symporter from Pseudomonas stutzeri RCH2

 Score =  105 bits (263), Expect = 3e-27
 Identities = 114/482 (23%), Positives = 204/482 (42%), Gaps = 46/482 (9%)

Query: 2   VTYSTFIVIAIYLILTILISWFVNQRSIGNTDFSTGGRQFGWFTAGVSILATYISAMTFI 61
           V+  T I   IY+   ILI +   + +   +D+  GGR  G F   +S  A+ +S    +
Sbjct: 3   VSTPTLITFVIYIAAMILIGFIAYRATKNFSDYILGGRSLGSFVTALSAGASDMSGWLLM 62

Query: 62  GMPGWVYQSGMEALNIHLNYPIV-----IFFAVVFFIPVFYRMGFTSIYEYLEHRFGVYA 116
           G+PG ++ +G+    I +   +      +F A    +   +     ++ +Y  HRF   +
Sbjct: 63  GLPGAIFVAGLSESWIAIGLIVGAWLNWLFVAGRLRVHTEHNHNALTLPDYFSHRFEDES 122

Query: 117 RTINS------VVFILVQCISSGVILYAIALILIQILPISIVEAIVYITLFTACYTYAGG 170
           R +        +VF  + C +SGV+  A A +      +    A+      T  Y + GG
Sbjct: 123 RMLRIFSALVILVFFTIYC-ASGVV--AGARLFESTFGMPYEYALWVGAAATILYVFIGG 179

Query: 171 ISTVIWTDMLQSAVLIAGSVA--IFVLLLLQVDGVHGVSREQLNIINLQFDLGVDTTLWA 228
              V WTD +Q+ ++I   +   +FV+L L   G    + E  N  N     G+    + 
Sbjct: 180 FLAVSWTDTVQATLMIFALLVTPVFVILALGDMGTAMATIEAQNPANFDMFRGLS---FV 236

Query: 229 GVVAVSFLHMSVYGTNQLIIQRTLATRCEKTAQKS-------MLLCGYGAFFIYFFFALL 281
            +V++    +  +G   +++ R +A    KT   +       M+L   GA  + F    L
Sbjct: 237 AIVSLLAWGLGYFGQPHILV-RFMAADSIKTIPNARRIGMTWMILTLAGAVAVGF----L 291

Query: 282 GVLLSIFYQERHFT---NSNEVILDFVFHHTNPWVIGLIISALAAAAMSTLDSTYNSMAT 338
           G+     + E+      N   V ++ V    NPWV G+I+S + AA MSTL +     ++
Sbjct: 292 GIAYFADHPEQAGAVSQNGERVFMELVKILFNPWVAGIILSGVLAAVMSTLSAQLLVSSS 351

Query: 339 VATFDLYQRFIRRNAPDHHYQAVARKMSLVAAGLVVIPALLAVSNESVLKTIASLTSIFV 398
             T D Y+  +R+NA       V R M L+ A   +I   +A + +S +  + S      
Sbjct: 352 ALTQDFYKAMLRKNASQTELVWVGRGMVLLIA---LIAIGIASNPDSKVLGLVSYAWAGF 408

Query: 399 GIRLGSFVL-GLFSNQANEKGVIAGSIISIAAVLGARLMDIAWPWFAPIGTVFFLVSGVV 457
           G   G  VL  L   +    G + G ++    V       + W  F  +G ++ ++ G +
Sbjct: 409 GAAFGPVVLISLLWKRMTRNGALVGMLVGAVTV-------VVWKEFIGLG-LYEIIPGFI 460

Query: 458 IS 459
           ++
Sbjct: 461 LA 462