Pairwise Alignments

Query, 513 a.a., sodium:solute symporter from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., SSS family solute/sodium (Na+) symporter (RefSeq) from Shewanella loihica PV-4

 Score =  109 bits (272), Expect = 2e-28
 Identities = 104/438 (23%), Positives = 195/438 (44%), Gaps = 37/438 (8%)

Query: 8   IVIAIYLILTILISWF-------VNQRSIGNTDFSTGGRQFGWFTAGVSILATYISAMTF 60
           I +AI++ LT L++         V + +  + D+   G    W     S++ T ISA   
Sbjct: 5   IQVAIFVALTTLVALITYLKCRKVTRDANDSRDYFLAGGGLSWIVVAGSLMMTNISAEQI 64

Query: 61  IGMPGWVYQSGMEALNI---HLNYPIVIFFAVVFFIPVFYRMGFTSIYEYLEHRF---GV 114
           +GM      +G + L +    +   I +     + IP++YR   T+  E LE ++   G+
Sbjct: 65  VGM------NGAQTLLVAWWEIAAAIGLIILAKWLIPIYYRYNCTTTTELLERKYQDKGI 118

Query: 115 YARTINSVVFILVQC-ISSGVILYAIALILIQI--LPISIVEAIVYITLFTACYTYAGGI 171
             R + S++F+L    I   V+LY  +L +  +  L IS+    +   +  A Y   GG+
Sbjct: 119 --RAMVSLLFMLGYAFILLPVVLYTGSLFMKSMFGLSISVTVLAIIFAVVGAIYAIFGGL 176

Query: 172 STVIWTDMLQSAVLIAGSVAIFVLLLLQVD-GVHGVSREQLNII-NLQFDLGVDTTLWAG 229
             +  +D L    LI   +A+  L +  VD  + G+  E+L +I + Q D+   T L   
Sbjct: 177 RAIAISDTLNGLGLILMGLAVSYLAMHAVDWDLSGIPLERLTLIGDSQSDIPWSTLL--- 233

Query: 230 VVAVSFLHMSVYGTNQLIIQRTLATRCEKTAQKSMLLCGYGAFFIYFFFALLGVLLSIFY 289
              + F+ +  +GTN +I QR LA +  K AQK +         I     L G++    Y
Sbjct: 234 -TGMIFIQIFYWGTNMVITQRALAAKSVKEAQKGLYAAVVMKLIIPVIVVLPGIVAFKLY 292

Query: 290 QERHFTNSNEVILDFVFHHTNPWVIGLIISALAAAAMSTLDSTYNSMATVATFDLYQRFI 349
            +       +++ D +      W+ G   + +A A +S+ +S  NS A + T D++Q +I
Sbjct: 293 GDVGDVAYGKLVGDLL----PSWLSGAFAAVIAGAVLSSFNSCLNSAAALYTCDIHQNYI 348

Query: 350 RRNAPDHHYQAVARKMSLVAAGLVVIPALLAVSNESVLKTIASLTSIFVGIRLGSFVLGL 409
             +A     + +  +++L+   + V    L   +ES++  +  L  ++    L +F+  L
Sbjct: 349 NADA---DVRKIGSRVALLFTLISVALVPLFARSESIIALLQQLNGLYSMPVLAAFICAL 405

Query: 410 FSNQANEKGVIAGSIISI 427
                + K +  G +  +
Sbjct: 406 VFKNVSAKAIKWGLVFGV 423