Pairwise Alignments

Query, 513 a.a., sodium:solute symporter from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., sodium/proline symporter (RefSeq) from Shewanella loihica PV-4

 Score =  101 bits (251), Expect = 7e-26
 Identities = 110/471 (23%), Positives = 212/471 (45%), Gaps = 45/471 (9%)

Query: 13  YLILTILISWFVNQRSIGNTDFSTGGRQFGWFTAGVSILATYISAMTFIGMPGWVYQSGM 72
           YLIL + I  +  + +    D+  GGR  G     +S+ A+ +S    +G+PG VY  G+
Sbjct: 14  YLILMMGIGLWAYKATDSVDDYILGGRSMGPAVTALSVGASDMSGWLLLGLPGAVYLGGL 73

Query: 73  EALNIHLNYPIVIFFAVVFFIPVFYRMG----FT----SIYEYLEHRFGVYARTIN--SV 122
               I +    ++F A + ++ V  R+     FT    ++ ++ E RF      +   S 
Sbjct: 74  GEAWIGIG---LVFGAWLNWLFVAKRLRIYTQFTDNALTLPDFFEKRFEDKQSVLKLVSA 130

Query: 123 VFILVQCI---SSGVILYAIALILIQILPISIVEAIVYITLFTACYTYAGGISTVIWTDM 179
           V ILV      SSG++    A++  ++  +    A++  +     YT+ GG   V WTD 
Sbjct: 131 VTILVFFTFYTSSGMV--GGAILFEKVFGLDYNLALLIGSGIIVAYTFVGGFFAVSWTDF 188

Query: 180 LQSAVLIAGSVAIFVLLLLQVD---GVHGVSREQLNIINLQFDLGVDTTLWAGVVAVSFL 236
            Q  +++   + + V +  Q +   G+H +    L++++       D T   G+ ++   
Sbjct: 189 FQGCLMLIALLIVPVTIFSQPETQNGIHSLDPAMLSLLS-------DNTTMIGLASLLAW 241

Query: 237 HMSVYGTNQLIIQRTLATRCEKTAQKSMLLCGYGAFFIYFFFALLGVLLS-----IFYQE 291
            +  +G    I+ R +A       + S  +        +   AL+G L +     +++ +
Sbjct: 242 GLGYFGQPH-ILSRFMAIGSADDLKVSRRIA-----MSWMIVALMGALATGLAGTLYFAD 295

Query: 292 RHFTNSNEVILDFVFHHTNPWVIGLIISALAAAAMSTLDSTYNSMATVATFDLYQRFIRR 351
           +   N   + +       NPW+ GL+++A+ +A MST+DS     ++V T D Y++++R 
Sbjct: 296 QPIDNPETIFIHLAHAAFNPWIGGLLVAAILSAIMSTIDSQLLVCSSVITEDFYKKWLRP 355

Query: 352 NAPDHHYQAVARKMSLVAAGLVVIPALLAVSNESVLKTIASLTSIFVGIRLGSFV-LGLF 410
           +A       + R   L  A   VI  ++A++ ES + ++ S      G   G  V L LF
Sbjct: 356 DASSKELMMIGRIGVLTIA---VISGVIALNPESSVLSLVSYAWAGFGAAFGPVVILSLF 412

Query: 411 SNQANEKGVIAGSII-SIAAVLGARLMDIAWPWFAPI-GTVFFLVSGVVIS 459
               +  G +A  I+ +I  VL  +     +  +  + G +F  ++GV++S
Sbjct: 413 WRGYSRNGAVATIIVGAITVVLWKQSTGGIFDLYEILPGFLFATLAGVLVS 463