Pairwise Alignments

Query, 513 a.a., sodium:solute symporter from Vibrio cholerae E7946 ATCC 55056

Subject, 549 a.a., transporter, SSS family from Sphingomonas koreensis DSMZ 15582

 Score =  124 bits (310), Expect = 1e-32
 Identities = 113/465 (24%), Positives = 207/465 (44%), Gaps = 44/465 (9%)

Query: 2   VTYSTFIVIAIYLILTILISWFVNQRSIGN----TDFSTGGRQFGWFTAGVSILATYISA 57
           +++   IV+ +Y I    ++ +V++   G+    +D+    +   W+  G S++A  ISA
Sbjct: 4   LSHIDLIVVIVYAIGIFALAQWVSREKAGHAKDTSDYFLASKSLPWWAIGASLIAANISA 63

Query: 58  MTFIGMPGWVYQSGMEALNIHLNYPIVIFFAVVFFIPVFYRMGFTSIYEYLEHRFGVYAR 117
              +GM G  Y  G+   +      + +     +F+P+F +    ++ ++LE RFG   R
Sbjct: 64  EQIVGMSGSGYAIGLAIASYEWMAALTLLIVGKWFLPIFLKNEIYTMPQFLEQRFGPTIR 123

Query: 118 TINSVVFI-LVQCISSGVILYAIALILIQILPISIVEAIVYITLFTACYTYAGGISTVIW 176
           T+ +V ++ L   ++   IL+  ++ + Q+  +    A+  +  F   Y   GG+  V  
Sbjct: 124 TVMAVFWLALYIFVNLTSILWLGSIAVTQVAGVDQDIALFGLGAFALVYQLRGGLKAVAL 183

Query: 177 TDMLQSAVLIAGSVAIFVLLLLQVDGVHGVSREQLNI---INLQFD--LGVDTTLWAGVV 231
           TD++Q  +L+ G + I  L L ++ G  GV      +   +  +FD  L  D   +  + 
Sbjct: 184 TDIVQVTLLVLGGLVISYLTLSKIGGDAGVMGGFTRLTTELPGKFDMILAPDNPFYKDLP 243

Query: 232 AVSFL-------HMSVYGTNQLIIQRTLATRCEKTAQKSMLLCGYGAFFIYFFFALLGVL 284
            +S L       ++S +G NQ IIQR LA +    AQK ++   +    +     L G+ 
Sbjct: 244 GLSVLIGGMWIANLSYWGFNQYIIQRALAAKSLSEAQKGVVFAAFLKLLMPVIIVLPGIA 303

Query: 285 LSIFYQERHFTNSNEVILDFVFHHTNPWVIGLIISALAAAAMSTLDSTYNSMATVATFDL 344
             I   +       +     +       ++GL+ +AL AA +++  S  NS+AT+ T DL
Sbjct: 304 AVILAPD---LAKPDQAYPTMMRLLPVGLLGLVFAALVAAIIASTASKINSIATIFTLDL 360

Query: 345 YQRF--IRRNAPDHHYQAVARKMSLVAA----------GLVVIPALLAVSNESVLKTIAS 392
           Y +   ++  A D    + +    L AA             V+  LLA+     L  + S
Sbjct: 361 YAKAKGVQSRAQDAATASASGDSGLTAAHEKQLVRVGRTTAVVATLLAIFTARPL--LGS 418

Query: 393 LTSIFVGIRLGS----------FVLGLFSNQANEKGVIAGSIISI 427
           L   F  I+  S          F+LGLF  +A E G + G++ S+
Sbjct: 419 LDQAFQYIQEFSGFVTPGITVIFLLGLFWPRATEAGALTGAVASV 463