Pairwise Alignments

Query, 513 a.a., sodium:solute symporter from Vibrio cholerae E7946 ATCC 55056

Subject, 564 a.a., L-arabinose/L-arabinobiose symporter (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score =  139 bits (349), Expect = 4e-37
 Identities = 124/472 (26%), Positives = 219/472 (46%), Gaps = 51/472 (10%)

Query: 7   FIVIAIYLILTI-LISWFVNQRSIGNTDFSTGGRQFGWFTAGVSILATYISAMTFIGMPG 65
           ++VI ++ +  I +I W V Q+   + D+  GGR   W   G SI A+ I +   IG+ G
Sbjct: 6   WLVIGVFFLALIGIIVWVVRQKQNDSADYFLGGRDATWLAIGASIFASNIGSEHLIGLAG 65

Query: 66  WVYQSGMEALNIHLNYPIVIFFAVVFFIPVFYRMGFTSIYEYLEHRFGVYARTINSVVFI 125
               SGM   +  +   +++    V F+P + R    ++ E+LE R+   +RTI SV+ +
Sbjct: 66  AGASSGMAMAHWEIQGWMILILGWV-FVPFYSRSMVYTMPEFLERRYNPQSRTILSVISL 124

Query: 126 LVQCISS-GVILYAIALILIQILPISIVEAI-------VYITLFTACYTYAGGISTVIWT 177
           +   ++   V +YA  L+  Q+  I  +  I       + + + TA YT  GG+ +V++T
Sbjct: 125 VSYVLTKVAVTVYAGGLVFQQVFGIKELWGIDFFWIAAIGLVVLTALYTIFGGMKSVLYT 184

Query: 178 DMLQSAVLIAGSVAIFVLLLLQVDG------------VHGVSREQLNIINLQFDLGVDTT 225
            +LQ+ +L+ GS+ I VL   ++ G            V+       N+I    D      
Sbjct: 185 SVLQTPILLLGSLIILVLGFKELGGWDEMMRVCGAVTVNDYGDTMTNLIRSNDDANFP-- 242

Query: 226 LWAG-VVAVSFLHMSVYGTNQLIIQRTLATRCEKTAQKSMLLCGYGAFFIYFFFALLGVL 284
            W G ++  + +    + T+Q I+QR L+ + EK A++  +   Y      F F + G++
Sbjct: 243 -WLGALIGSAIIGFWYWCTDQFIVQRVLSGKNEKEARRGTIFGAYLKLLPVFLFLIPGMI 301

Query: 285 LSIFYQE--------------RHFTNSNEVILDFVFHHTNPWVIGLIISALAAAAMSTLD 330
               +Q+                  N++      V       V GL++  + AA MS+L 
Sbjct: 302 AFALHQKYIGAGGEGFLPMLANGTANADAAFPTLVAKLLPAGVKGLVVCGILAALMSSLA 361

Query: 331 STYNSMATVATFDLYQRFIRRNAPDHHYQAVAR--KMSLVAAGLVVIPALLAVSNESVLK 388
           S +NS A + T D Y+RF R   P+     + +   + +V  G++ IP + +V +  VL 
Sbjct: 362 SLFNSSAMLFTIDFYKRF-RPETPEKKLVGIGQIATVVIVILGILWIPIMRSVGD--VLY 418

Query: 389 T-IASLTSIFVGIRLGSFVLGL----FSNQANEKGVIAGSIISIAAVLGARL 435
           T +  + S+       +F+LG+     S Q    G+IAG II +   LGA++
Sbjct: 419 TYLQDVQSVLAPGIAAAFLLGICWKRTSAQGGMWGLIAGMIIGLTR-LGAKV 469