Pairwise Alignments

Query, 513 a.a., sodium:solute symporter from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., sodium/proline symporter (RefSeq) from Shewanella sp. ANA-3

 Score =  112 bits (281), Expect = 2e-29
 Identities = 109/480 (22%), Positives = 219/480 (45%), Gaps = 37/480 (7%)

Query: 2   VTYSTFIVIAI--YLILTILISWFVNQRSIGNTDFSTGGRQFGWFTAGVSILATYISAMT 59
           +T  T I+I    YL+L + I ++  + +    D+  GGR+ G     +S+ A+ +S   
Sbjct: 1   MTIETPILITFVGYLVLMMGIGFWAYRATDTVDDYILGGRKMGPAVTALSVGASDMSGWL 60

Query: 60  FIGMPGWVYQSGMEALNIHLNYPIVIFFAVVFF---IPVFYRMGFTSIY--EYLEHRFGV 114
            +G+PG VY  G+    I +   +  +   +F    + ++ ++   ++   ++ E RF  
Sbjct: 61  LLGLPGAVYLGGLGEAWIGIGLVVGAWLNWLFVAKRLRIYTQLADNALTLPDFFEKRFHD 120

Query: 115 ---YARTINSVVFILVQCISSGVILYAIALILIQILPISIVEAIVYITLFTACYTYAGGI 171
              Y + +++V  ++     +   +   A++  ++  +    A+V  +     YT+ GG 
Sbjct: 121 KQGYLKLVSAVTILVFFTFYASSGMVGGAILFEKVFGLDYTVALVIGSAIIVGYTFIGGF 180

Query: 172 STVIWTDMLQSAVLIAGSVAIFVLLLLQVD---GVHGVSREQLNIINLQFDLGVDTTLWA 228
             V WTD  Q  +++   + I   +    +   G+  +    L +I+       D T   
Sbjct: 181 FAVSWTDFFQGCLMLIALLIIPFAVFSHPESHAGIESIDPAMLALIS-------DKTTVI 233

Query: 229 GVVAVSFLHMSVYGTNQLIIQRTLATRCEKTAQKSMLLCGYGAFFIYFFFALLGVLL--- 285
           G++++    +  +G    I+ R +A         S  +        +   +L+G L    
Sbjct: 234 GLLSLLAWGLGYFGQPH-ILSRFMAIGTADALPLSRRIA-----MSWMMLSLIGALATGL 287

Query: 286 --SIFYQERHFTNSNEVILDFVFHHTNPWVIGLIISALAAAAMSTLDSTYNSMATVATFD 343
             S+++  +   N+  V +       NPW+ GL+I+A+ +A MST+DS     ++V T D
Sbjct: 288 AGSLYFANQPLANAETVFIHLAQAAFNPWIGGLLIAAILSAIMSTIDSQLLVCSSVITED 347

Query: 344 LYQRFIRRNAPDHHYQAVARKMSLVAAGLVVIPALLAVSNESVLKTIASLTSIFVGIRLG 403
            Y++++R  A D     V R M ++A  + VI  ++A++ ES + ++ S      G   G
Sbjct: 348 FYRKWLRPQADDRELMMVGR-MGVLA--IAVIAGIIALNPESSVLSLVSYAWAGFGAAFG 404

Query: 404 SFV-LGLFSNQANEKGVIAGSII-SIAAVLGARLMDIAWPWFAPI-GTVFFLVSGVVISR 460
             V L LF  Q +  G IA  I+ ++  V+  +L    +  +  + G VF +++GVV+S+
Sbjct: 405 PVVLLSLFWKQYSRNGAIATIIVGALTVVIWKQLTGGIFDLYEILPGFVFAIIAGVVVSK 464