Pairwise Alignments

Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  188 bits (478), Expect = 5e-52
 Identities = 161/598 (26%), Positives = 276/598 (46%), Gaps = 57/598 (9%)

Query: 39  INQVDKLEVRLLNLRRNEKDFLLRS-DAKYLDTFQKNTDLFLNLQTEL--------DAIM 89
           + ++  L   L +LR     F+L + DA+  +   KN  ++L  QT+L        +   
Sbjct: 46  MTEISLLNKTLTDLRIARLQFMLANGDAESTERLDKNLGIYLAQQTQLLNTFKNPINVAQ 105

Query: 90  LKYELGDSNALRTDLLEYKQGFEQLVRAYQTLGLNPESGLWKSYYQALEQAKQQASAEE- 148
           LK + G +   +  L + ++ + Q   A  T+     + L +          Q    EE 
Sbjct: 106 LKEQAGYNAQYQNSLNDMRKAYAQANGARTTID-GAATRLGELTAGVTNHVLQLPDYEED 164

Query: 149 ----LLALVDFHQQV----------LAGSANSSALNQFSDLIKSAQAVVNQAKVIGLKYN 194
               LLA+    + V          +A  AN +    ++ L  +AQA + +     L  N
Sbjct: 165 RFAQLLAISQIKEDVQRAQYLLRVYMAAPANDAVKAIYTQL-DTAQATLGR-HAGALDAN 222

Query: 195 EG--------LLGATRSHSHDVEEMFKAFSKTLTQAVD--------------------DK 226
            G        +L   RS    +E   +A +K   +  D                    D 
Sbjct: 223 SGAALQQIRTVLDEYRSAIQALETATQAIAKARQEMTDQQKEIVRISDSLYQFQLDRLDV 282

Query: 227 QKTMTTTKLSVTIAVVLII-LLVIFQISRSINLQVSQLLLVIQRIAQSNDISLRAELKGN 285
           + +   ++L V+  + L++ +L  + I+R I L +   +  ++RIA S D+S  A+++  
Sbjct: 283 ESSDARSRLIVSTLLALVLGVLAAWLITRQIILPLRTTMADVERIA-SGDLSETAQIQRR 341

Query: 286 DEITAVARYFNSLLDKFEHLISSSQTKSHQLYSSTSSMHDELEQVIEQFNVQSEHMGLMA 345
           DE+  + R    +      LI   +    Q+ ++   +    +Q     N Q E    +A
Sbjct: 342 DELGVLQRGIQQMGSTLRELIGGIRDGVSQISAAAEELSAVTQQTSAGVNSQKEETDQVA 401

Query: 346 TSVQQMVSTISEISESTNIAVDGVNQAARNAEQGRSVVVTTVKNIDLLSSTLQKSQHSIG 405
           T++ +M +T+ E++ +   A     +A   A +G  VV   V  I+ ++S + +S  ++ 
Sbjct: 402 TAMHEMSATVQEVARNAEQAALAATEADSEAREGDRVVTEVVTQIERMASAVVRSTEAMT 461

Query: 406 SLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTHQ 465
           +L    +KIG  +++I+ +AEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT +
Sbjct: 462 ALQEESDKIGSVMNVIRAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQK 521

Query: 466 STEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSASRQLDESLQQILRDMHTIQDNSQR 525
           STEEI  +V+ +Q+   QV   +    +     +  +R+   SL  I R +  IQ  +Q+
Sbjct: 522 STEEIEGLVAALQNGTQQVASIMHTSRDLTDSGVELARRAGASLGSITRTVSNIQAMNQQ 581

Query: 526 IAAAIEEQGSVMNHVSESIAELNTISENNMRSAQQCLTEVDTVSRQAHAMDEAVAEFR 583
           IAAA EEQ +V   +S S+  +  +SE    ++++       ++R    +   V+ FR
Sbjct: 582 IAAAAEEQSAVAEEISRSVVNVRDVSEQTAAASEETAASSTELARLGGQLQMMVSRFR 639



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 501 ASRQLDESLQQILRD-MHTIQDNSQRIAAAIEEQ-GSVMNHVSESIA---ELNTISENNM 555
           AS  L E+ Q   RD +  +Q   Q++ + + E  G + + VS+  A   EL+ +++   
Sbjct: 328 ASGDLSETAQIQRRDELGVLQRGIQQMGSTLRELIGGIRDGVSQISAAAEELSAVTQQTS 387

Query: 556 RSAQQCLTEVDTVSRQAHAMDEAVAEFRTNRD 587
                   E D V+   H M   V E   N +
Sbjct: 388 AGVNSQKEETDQVATAMHEMSATVQEVARNAE 419