Pairwise Alignments

Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  174 bits (441), Expect = 8e-48
 Identities = 123/429 (28%), Positives = 212/429 (49%), Gaps = 26/429 (6%)

Query: 174 DLIKSAQAVVNQAKVIGLKYNEGL-----------------LGATRSHSHDVEEMFKAFS 216
           +L K  +++ ++ + +G+ Y +GL                  G  R+ S  + E+ K   
Sbjct: 110 ELAKQIESLRSEHRTLGVAYRKGLDAYIAADSDPLAGDAAVAGIDRATSAQLSELVKQLG 169

Query: 217 KTLTQAVD----DKQKTMTTTKLSVTIAVVLIILLVIFQISRSINLQVSQLLLVIQRIAQ 272
               Q  +    D Q T +   L + +A V++ L  ++ ++R I   +  L+  I R++Q
Sbjct: 170 DAAVQRSETIRADAQSTASLGPLIMILASVVVALFSLWLVNRRIIEPIRSLIEHIARLSQ 229

Query: 273 SNDISLRAELKGNDEITAVARYFNSLLDKFEHLISSSQTKSHQLYSSTSSMHDELEQVIE 332
               + R +    DE+  +A   N L D      +  Q  +  L S++  +      + +
Sbjct: 230 GK-FADRVDASRADELGRLAVAANVLRDFLADTFTRLQQSTSNLDSASGELSAIARLMAD 288

Query: 333 QFNVQSEHMGLMATSVQQMVSTISEISESTNIAVDGVNQAARNAEQGRSVVVTTVKNIDL 392
               Q      +AT++ +M +T  E+S     A    + A  +A+QG +V+  T+  I  
Sbjct: 289 GTREQFSRTDQVATAMHEMSATAQEVSRHAAEAAQAADAADHSAQQGEAVMRATIATITD 348

Query: 393 LSSTLQKSQHSIGSLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIEAARAGEQGRGFAVV 452
           +S  +  +   I  L     +IG  + +I+GIA+QTNLLALNAAIEAARAG+ GRGFAVV
Sbjct: 349 VSGEIASTAEVIRRLEGDSGRIGKVLEVIRGIADQTNLLALNAAIEAARAGDAGRGFAVV 408

Query: 453 ADEVRSLATRTHQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSASRQLDESLQQI 512
           ADEVR+LA RT +ST EI +++  +Q+  S  V  I+    + ++ +    +    LQ+I
Sbjct: 409 ADEVRTLAQRTAESTAEIHQIIDTVQTGASNAVRAIESGQARSEQGVGQVTEAGLMLQRI 468

Query: 513 LRDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAELNTISENNMRSAQQCLTEVDTVSRQA 572
              +  I+D +++IA A EEQ +V   +S +I E+ +I+  N    QQ +   +T S+  
Sbjct: 469 TEAVEAIRDMNRQIATAAEEQTAVAEDISRNITEITSIATIN----QQNVERTETASQNL 524

Query: 573 HAMDEAVAE 581
           H +   + E
Sbjct: 525 HGLSAQLTE 533



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 259 QVSQLLLVIQRIA-QSNDISLRAELKGN-------------DEITAVARYFNSLLDKFEH 304
           ++ ++L VI+ IA Q+N ++L A ++               DE+  +A+       +   
Sbjct: 369 RIGKVLEVIRGIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRTLAQRTAESTAEIHQ 428

Query: 305 LISSSQTKSHQLYSSTSSMHDELEQVIEQFNVQSEHMGLMATSVQQMVSTISEISESTNI 364
           +I + QT +     +  S     EQ + Q        GLM   + + V  I +++     
Sbjct: 429 IIDTVQTGASNAVRAIESGQARSEQGVGQVT----EAGLMLQRITEAVEAIRDMNRQIAT 484

Query: 365 AVDGVNQAA----RNAEQGRSVVVTTVKNIDLLSSTLQKSQHSIGSLNAFVEKIGG 416
           A +     A    RN  +  S+     +N++   +  Q        L    +++ G
Sbjct: 485 AAEEQTAVAEDISRNITEITSIATINQQNVERTETASQNLHGLSAQLTEVTQRLAG 540