Pairwise Alignments

Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  195 bits (495), Expect = 5e-54
 Identities = 134/459 (29%), Positives = 238/459 (51%), Gaps = 12/459 (2%)

Query: 131 KSYYQALEQAKQQASAEELLALVDFHQQVLAGSANSSALNQFSDLIKSAQAVVNQAKVIG 190
           K YY  +++            LVD +   + G A+ + +  F+++I+  Q   + + ++ 
Sbjct: 101 KEYYFTIDRQGMMIQHPFAKKLVDTN---VLGMADPNGVKLFAEMIRLTQN--SDSALVN 155

Query: 191 LKYNEGLLGATRSHSHDVEEMFKAFSKTLTQA--VDD---KQKTMTTTKLSVTIAVVLII 245
             +N+    A  S    V + F  +   +     VDD   +++  T   L V + V   +
Sbjct: 156 YMWNQPDADAP-SPKMSVVKRFSEWGWIVGTGIYVDDIAAQKQEFTWQYLLVFLLVWGPV 214

Query: 246 LLVIFQISRSINLQVSQLLLVIQRIAQSN-DISLRAELKGNDEITAVARYFNSLLDKFEH 304
           + ++  ISRS+   + + L+  + IA+   +++LR E +G DE++ V+ YFN+ + + + 
Sbjct: 215 MALLLMISRSVTEPLQRTLMAFKNIAEGEANLTLRLEERGRDELSQVSVYFNAFVGRIQS 274

Query: 305 LISSSQTKSHQLYSSTSSMHDELEQVIEQFNVQSEHMGLMATSVQQMVSTISEISESTNI 364
           L+ S +         +SS+ +   Q     N   +    +A ++ QM +T SE++ +  +
Sbjct: 275 LVISVRDSVDHSRQLSSSLSNVAHQAAHATNSMQQETQSVAAAINQMSATASEVAANAQL 334

Query: 365 AVDGVNQAARNAEQGRSVVVTTVKNIDLLSSTLQKSQHSIGSLNAFVEKIGGAVSIIQGI 424
           A      A   A+    VV   + N+  LSS L+++     +L     +IG  + +I GI
Sbjct: 335 AAKSAKNADSQADSTNLVVTHAMGNVRQLSSELEETSEIAKALKVSSGEIGQILDVIVGI 394

Query: 425 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTHQSTEEITRVVSNIQSQMSQV 484
           AEQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA+RT QST+EI  ++  I+  + +V
Sbjct: 395 AEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRTQQSTQEINAIIEAIRGAVDKV 454

Query: 485 VDDIDLCNNQGQETLSASRQLDESLQQILRDMHTIQDNSQRIAAAIEEQGSVMNHVSESI 544
              +     Q   T+  + Q+ ++L  I + +  I D + +IA A +EQ +V+  ++E+I
Sbjct: 455 NASVARARQQSDNTVDETAQVMDALGLIKQAIGQINDMNLQIATATDEQSAVIAELNENI 514

Query: 545 AELNTISENNMRSAQQCLTEVDTVSRQAHAMDEAVAEFR 583
             +N IS  N+  ++      D ++  +  M + +A F+
Sbjct: 515 NRINEISVENLSKSETVGHTSDRIAEDSRQMAQLIAVFK 553