Pairwise Alignments

Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  295 bits (755), Expect = 4e-84
 Identities = 197/619 (31%), Positives = 315/619 (50%), Gaps = 36/619 (5%)

Query: 1   MNIRHKLYTLGIIAILGSIAIFFTTSQFAQTNDELNRAINQVDKLEVRLLNLRRNEKDFL 60
           M IRHKL     ++I   IA+F      A   D+L+ A  QV +LE  +L+LRR+EKDF 
Sbjct: 1   MLIRHKLLVSAAVSICSVIAMFGLQRFSAAKLDDLSHAAQQVIELEKDVLSLRRDEKDFF 60

Query: 61  LRSDAKYLDTFQKNTDLFLNLQTELDAIMLKYELGDSN--ALRTDLLEYKQGFEQLVRAY 118
            R D  YLD  +            L AI  ++++  S+  A R +L  Y+  F ++    
Sbjct: 61  ARLDLAYLDKHKTQARELDEKMVSLGAIFDRHDISQSDLQAFRQNLTRYESIFAEIAELQ 120

Query: 119 QTLGLNPESGLW---KSYYQALEQAKQQASAEELLALV--------DF------------ 155
           + +GL+P+ GL+   +S    +E   ++ +  EL+  +        DF            
Sbjct: 121 KQIGLHPKDGLYGALRSAVHNVETLVKEKNEPELMVTMLQLRRNEKDFMLRRAMSYLDKF 180

Query: 156 -------HQQVLAGSANSSALNQFSDLI----KSAQAVVNQAKVIGLKYNEGLLGATRSH 204
                   QQV     + S   + + LI    K+ +A+V++ + +GL  + G + + R  
Sbjct: 181 KGNLALLRQQVSGAMLSDSVKGELNALIDDYEKNFKALVSKEQELGLDKDSGSMASLRDS 240

Query: 205 SHDVEEMFKAFSKTLTQAVDDKQKTMTTTKLSVTIAVVLIILLVIFQISRSINLQVSQLL 264
               E+           A+ D +    T  + V I + L+++     I RSI   V ++ 
Sbjct: 241 ISSAEKSLVQLKAQSMDAISDAESATVTISIVVFILITLVLIGFTLAIIRSIMEPVQRIS 300

Query: 265 LVIQRIAQSNDISLRAELKGNDEITAVARYFNSLLDKFEHLISSSQTKSHQLYSSTSSMH 324
             I RI  + D++LR + K +DEI  +AR+FNS+++ F+ LI    T    +  S   + 
Sbjct: 301 DAISRIEATKDLTLRCDTKVDDEIGQIARHFNSMVESFQSLIREVLTSVEVVNHSCQELS 360

Query: 325 DELEQVIEQFNVQSEHMGLMATSVQQMVSTISEISESTNIAVDGVNQAARNAEQGRSVVV 384
           +   +  E    Q     ++AT++ +M +TI EI+ +T +A +       NA+QG+  V 
Sbjct: 361 ENSMRASEGVGRQLNETDMVATAITEMGATIDEIASNTELAAERAGNTHDNAQQGQVGVE 420

Query: 385 TTVKNIDLLSSTLQKSQHSIGSLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIEAARAGE 444
            T++ I  L++ L  S   +  L    E IG  + +I+GIAEQTNLLALNAAIEAARAGE
Sbjct: 421 HTIEKIQALAAQLTDSAQVVSELEKDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGE 480

Query: 445 QGRGFAVVADEVRSLATRTHQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSASRQ 504
           QGRGFAVVADEVRSLA RT +STEEI  ++  +QS+   +V  ++    QG E+   +  
Sbjct: 481 QGRGFAVVADEVRSLAMRTQESTEEIAGIIQTLQSRTRSIVQLMEATQRQGIESADQAAS 540

Query: 505 LDESLQQILRDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAELNTISENNMRSAQQCLTE 564
               L+QI  D+  I D S +IAAAIEEQ  V + V++++  +  I+  + ++A +    
Sbjct: 541 AGALLEQINADVTNIMDMSTQIAAAIEEQSMVASEVNKNVVVIRDIAAESAQAADENAKA 600

Query: 565 VDTVSRQAHAMDEAVAEFR 583
            D V  +   + +AV+ F+
Sbjct: 601 SDDVKARTQVLYQAVSLFK 619