Pairwise Alignments

Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  185 bits (469), Expect = 6e-51
 Identities = 148/565 (26%), Positives = 278/565 (49%), Gaps = 24/565 (4%)

Query: 28  FAQTNDELNRAINQVDKLEVRLLNLRRNEKDFLLRSDAKYLDTFQKNTDLFLNLQTELDA 87
           FAQ   ++N+ INQ+  +  R+        D L  S  + +  + K   L L +  +   
Sbjct: 113 FAQQMSQVNQMINQLGDIRSRV--------DSLSISVPEEVAYYTKLNGLLLEIVDQTSQ 164

Query: 88  IMLKYELGDSNALRTDLLEYKQ--GFEQLVRAYQTLGLNP-ESGLWKSYYQALEQAKQQA 144
                ++   +A     L+ K+  G E+ V +  T G +  + G++  +   + +  Q  
Sbjct: 165 QGASRQIAVESASFAAYLQMKERAGIERAVLS-STFGNSAFKPGMFLKFVNLVSE--QNT 221

Query: 145 SAEELLAL----VDFHQQVLAGSANSSALNQFSD--LIKSAQAVVNQAKVIGLKYNEGLL 198
             E  LAL    V+   Q +  S    A+N   D  + + A A+  Q+       +   +
Sbjct: 222 YQERFLALATDKVNADYQQVVSSPTFMAVNALRDKAMSQDAGALSGQSSTDWFAKSTARI 281

Query: 199 GATRSHSHDVEEMFKAFSKTLTQAVDDKQKTMTTTKLSVTIAVVLIILLVIFQISRSINL 258
            A R     +       +++   A+ + +  M +  + + ++ +++ILL +F I R ++ 
Sbjct: 282 DALRQFERQLSHHLLTDTRS---ALANAKSLMVSVIVLMLVSGLVVILLSLF-IGRYLHA 337

Query: 259 QVSQLLLVIQRIAQSNDISLRAELKGNDEITAVARYFNSLLDKFEHLISSSQTKSHQLYS 318
            +  L   +    +  D+S+R +LKG DEI  +   FN ++  FE +I   +T +  L +
Sbjct: 338 SLRHLYHKVTESQKHYDLSVRVDLKGKDEIGQLGSAFNHMMADFEKVIGMVRTNTQGLLT 397

Query: 319 STSSMHDELEQVIEQFNVQSEHMGLMATSVQQMVSTISEISESTNIAVDGVNQAARNAEQ 378
           ++  M      + E   +    +  +A+++ +M +T+ EI+++   A +   QA + A++
Sbjct: 398 ASQEMEGCARIMREDVALGHSEVDQVASAMTEMSATVQEIAQNAVQASEASAQANKEAKE 457

Query: 379 GRSVVVTTVKNIDLLSSTLQKSQHSIGSLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIE 438
           G   V  T  +I+ L+  +  +  +I +L+  ++ I   + +I GIAEQTNLLALNAAIE
Sbjct: 458 GSLEVERTADSINELAQEIADAAQAINNLDEDIKGIVDVLGVISGIAEQTNLLALNAAIE 517

Query: 439 AARAGEQGRGFAVVADEVRSLATRTHQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQET 498
           AARAGE GRGFAVVADEVRSLA R   STE+I  +   ++      V  ++   N+ + +
Sbjct: 518 AARAGEMGRGFAVVADEVRSLAQRAQTSTEDIRSMTERLERGAKIAVKAMESGRNKAEIS 577

Query: 499 LSASRQLDESLQQILRDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAELNTISENNMRSA 558
           +  S++  E L +I+ ++  I   +++IAAA  EQ +V   V+++  +++ I  N    +
Sbjct: 578 VVESKRAGEELIRIVSEVSVIDSMNEQIAAATHEQSAVSEEVNQNAMKISDIYRNTHEVS 637

Query: 559 QQCLTEVDTVSRQAHAMDEAVAEFR 583
            +     +++     AM E V++F+
Sbjct: 638 DRLSQLNESLLNDVSAMSELVSKFK 662