Pairwise Alignments

Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 572 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  181 bits (459), Expect = 7e-50
 Identities = 122/397 (30%), Positives = 202/397 (50%), Gaps = 8/397 (2%)

Query: 194 NEGLLGATRSHSHDVEEMFKAF-SKTLTQAVDDKQKTMTTTKLSVTIAVV------LIIL 246
           N+ LL        D+ +  +AF    + +A    Q +  T  L + +  +      L I 
Sbjct: 176 NQLLLEKINPLFKDITDQAQAFLDMQIAEAKTSYQASQETVSLYIWLVAIFSGVAMLAIS 235

Query: 247 LVIFQISRSINLQVSQLLLVIQRIAQSNDISLRAELKGNDEITAVARYFNSLLDKFEHLI 306
           +    I R ++L V QL      IA + D++ R  L G+DE   +A + N +   F+  +
Sbjct: 236 VSSVFIIRRVSLSVVQLEETAVDIA-AGDLTKRIRLGGHDEFAHIAEHVNRIASDFQQAV 294

Query: 307 SSSQTKSHQLYSSTSSMHDELEQVIEQFNVQSEHMGLMATSVQQMVSTISEISESTNIAV 366
           +++   + +L S+         Q       Q +   L+AT++ +  +T+ E+++S   A 
Sbjct: 295 TNTHASTSRLASAAEENAVVSTQTQRNVLDQQQQTQLIATAIHEFTATVREVAQSAASAA 354

Query: 367 DGVNQAARNAEQGRSVVVTTVKNIDLLSSTLQKSQHSIGSLNAFVEKIGGAVSIIQGIAE 426
                A   A   + VV  ++  I+ L+  L ++  ++  L     +IG  V +IQ I+E
Sbjct: 355 TASQDANGAAHGAQGVVDESIAVIEALAQELSRASEAMTLLAQHSNEIGTVVDVIQAISE 414

Query: 427 QTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTHQSTEEITRVVSNIQSQMSQVVD 486
           QTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA RT  STEEI +++  +Q      + 
Sbjct: 415 QTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAKRTQDSTEEIQKMIQRLQQGARDSMQ 474

Query: 487 DIDLCNNQGQETLSASRQLDESLQQILRDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAE 546
            +     Q + ++  S  + ++LQQIL  +  I   + +IA A EEQ SV   ++ +I  
Sbjct: 475 MMQSGTEQVKLSVDKSLMVRDALQQILNSIEEINALNAQIATASEEQSSVTEEININITN 534

Query: 547 LNTISENNMRSAQQCLTEVDTVSRQAHAMDEAVAEFR 583
           ++ IS+     A+Q     + ++R A +M+  +A ++
Sbjct: 535 ISEISDQTAEGARQSSDATEDLARLAESMEADIAHYK 571