Pairwise Alignments

Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  192 bits (487), Expect = 5e-53
 Identities = 163/586 (27%), Positives = 274/586 (46%), Gaps = 44/586 (7%)

Query: 33  DELNRAIN-QVDKLEVRLLNLRRNEKDF------LLRSDAKYLDTFQKNTDLFLNLQTEL 85
           D+LNR I    D L  ++ +LR N + F      ++++  + L T +   D   +L+   
Sbjct: 97  DQLNRIIQGHEDNLGGQIKSLRANYQSFNDNSLKMMQAREQSLQTQESLVDNLESLEGAA 156

Query: 86  DAIMLKYELGDSNALRTDLLEYKQGFEQLVRAYQTLGLNPE---SGLWKSYYQ---ALEQ 139
           D         D+ +L  DL++ +   +   R       N +   S L  S Y    A E+
Sbjct: 157 D---------DTASLLLDLIDLETSQDPTEREIAATASNIDNSFSNLITSSYDLVNAKEK 207

Query: 140 AKQQASAEELLALVDFHQQVLA-------GSANSSALNQFSDLIKSAQAVVN------QA 186
           +K +   +EL  ++   Q  L        G  +  AL+  +        ++N      + 
Sbjct: 208 SKYETILKELDYIISEAQNKLEYVSRHWEGVIDQEALDNINTEASKVFTMLNGPDSILKR 267

Query: 187 KVIGLKYN---EGLLGATRSHSHDVEEMFKAFSKTL---TQAVDDKQKTMTTTKLSVTIA 240
           K   L +N     LL    S++  V +   + +K +   +QAV  K      +    T+A
Sbjct: 268 KGQQLDFNLQASQLLNTVESNATAVNQSMGSLNKAIESTSQAVSVKAIDEIDSASYKTLA 327

Query: 241 VVLIILLVIFQISRSINLQVSQLLLVIQR---IAQSNDISLRAELKGNDEITAVARYFNS 297
           +VLI ++V   +S ++   +   L  +     I  S +++ + +  G+DE   ++R  N 
Sbjct: 328 LVLIAIVVAVLVSIAVIRPLKNSLDKVNNALNILASGNLTHKLDDSGHDEFAELSRNCNR 387

Query: 298 LLDKFEHLISSSQTKSHQLYSSTSSMHDELEQVIEQFNVQSEHMGLMATSVQQMVSTISE 357
           L+D    LI     +S+QL ++         Q       Q   +  +AT+  Q+ S+  +
Sbjct: 388 LVDSLRTLIQGILDRSNQLAAAAEETSAITAQTTAGIQEQKNQVDQVATATTQLSSSAMQ 447

Query: 358 ISESTNIAVDGVNQAARNAEQGRSVVVTTVKNIDLLSSTLQKSQHSIGSLNAFVEKIGGA 417
           +S S + A++ + QA   A+  R++     + I  L+  + K+   I  +++    IG  
Sbjct: 448 VSTSADEALNQIRQADEEAQHMRAIADENKRTILALADEVAKAGQVINKVHSDSASIGSI 507

Query: 418 VSIIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTHQSTEEITRVVSNI 477
           + +I+GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA+RT  ST+EI +++  +
Sbjct: 508 LDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQQMIQVL 567

Query: 478 QSQMSQVVDDIDLCNNQGQETLSASRQLDESLQQILRDMHTIQDNSQRIAAAIEEQGSVM 537
           Q    + V  ++L   Q    +  + Q + +L+ I   +H   D+   IA A +EQ  V 
Sbjct: 568 QQGTQEAVSVMELGRQQANSCVEKTEQANVALESISNAVHYAHDSGTHIANAAQEQNLVS 627

Query: 538 NHVSESIAELNTISENNMRSAQQCLTEVDTVSRQAHAMDEAVAEFR 583
             VSE +  +  ISE     A Q       V++ A  +  +V EF+
Sbjct: 628 QQVSEKLEHIAAISEETATGADQTAQSSHQVAQLAEELQASVGEFK 673