Pairwise Alignments

Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  191 bits (484), Expect = 9e-53
 Identities = 112/384 (29%), Positives = 211/384 (54%), Gaps = 5/384 (1%)

Query: 201 TRSHSHDVEEMFKAFSKTLTQAVDDKQKTMTTTKLSVTIAVVLIILLVIFQISRSINLQV 260
           T +++ D++   +++ + +T+ ++DK   +    L V +A+  +++LV  Q  R +N  +
Sbjct: 174 TGAYTDDIDAQVESYREVMTKHMNDKAMMILLFAL-VLVAITAVVMLVAAQ--RMVN-PI 229

Query: 261 SQLLLVIQRIAQSN-DISLRAELKGNDEITAVARYFNSLLDKFEHLISSSQTKSHQLYSS 319
             ++  ++ IA+   D++ R +++G+DEI  + R FN  +DK + +I      + ++ S 
Sbjct: 230 HNMVQNLEDIAKGEGDLTKRLDVQGSDEIAMLGRAFNQFVDKLQGIIKDVARATVEVKSG 289

Query: 320 TSSMHDELEQVIEQFNVQSEHMGLMATSVQQMVSTISEISESTNIAVDGVNQAARNAEQG 379
             ++  +   + +Q    +     + T++ +M +T SE++ ST    +    A ++    
Sbjct: 290 ADNISSQTAAMAQQLISHNNETDQVVTAITEMSATASEVAMSTTQVAEATQAATQDVGNA 349

Query: 380 RSVVVTTVKNIDLLSSTLQKSQHSIGSLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIEA 439
           +  V +++  +  L + +  +   I SLN   +KI   +S+I GIAEQTNLLALNAAIEA
Sbjct: 350 QECVDSSLHEVSTLMAEIDMAAGHINSLNEQSQKINSVLSVIGGIAEQTNLLALNAAIEA 409

Query: 440 ARAGEQGRGFAVVADEVRSLATRTHQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETL 499
           ARAGEQGRGFAVVADEVRSLA+RT  ST EI  ++S + + +S  V  ++        ++
Sbjct: 410 ARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSELHNLVSLAVSSMESSQQSCHRSV 469

Query: 500 SASRQLDESLQQILRDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAELNTISENNMRSAQ 559
           ++SR + +SL  +   + +I D S +IA A  EQ SV   ++ ++  +  I    ++++ 
Sbjct: 470 TSSRAISDSLGAVTSAVTSINDMSTQIATAATEQSSVTEEINRNVFAIQEIVNELLQASN 529

Query: 560 QCLTEVDTVSRQAHAMDEAVAEFR 583
                   ++ +   +D  V +F+
Sbjct: 530 SASDTSQGLANEGRNLDTLVGQFK 553