Pairwise Alignments

Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  181 bits (458), Expect = 1e-49
 Identities = 106/361 (29%), Positives = 196/361 (54%), Gaps = 4/361 (1%)

Query: 227 QKTMTTTKLSVTIAVVLIILL---VIFQISRSINLQVSQLLLVIQRIAQSN-DISLRAEL 282
           ++ M+  +L + +  V+ +L+   + + I++SI   +++    +  IA+   D++ R E+
Sbjct: 273 EQAMSDIRLKLIMIGVIALLIGTAIAWFIAKSITRPIAETTDALNDIAEGEGDLTRRIEV 332

Query: 283 KGNDEITAVARYFNSLLDKFEHLISSSQTKSHQLYSSTSSMHDELEQVIEQFNVQSEHMG 342
           K  DE+  +A+ FN   +K    ++     +  L +S   M     +  +  N Q     
Sbjct: 333 KSKDEMAQLAQAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITHETQQMANRQHLETE 392

Query: 343 LMATSVQQMVSTISEISESTNIAVDGVNQAARNAEQGRSVVVTTVKNIDLLSSTLQKSQH 402
            +AT++ +M +T+ E++ +   A D    A+ + EQG+ +V   +  I LL+  + ++ +
Sbjct: 393 QVATAMNEMAATVQEVAHNATDAADAATHASESTEQGKLLVEKVISTISLLADEIAQAAN 452

Query: 403 SIGSLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATR 462
           +I  L     +I   + +I+ IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA+R
Sbjct: 453 AINELERNTTQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASR 512

Query: 463 THQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSASRQLDESLQQILRDMHTIQDN 522
           T  ST EI +++  +Q      V  ++      Q  +S   +   +L+ I + + TI   
Sbjct: 513 TQASTTEIQQMIETLQQSAKATVSSMNTSTATTQSCVSLVHEAGSALEAITQAVSTISQM 572

Query: 523 SQRIAAAIEEQGSVMNHVSESIAELNTISENNMRSAQQCLTEVDTVSRQAHAMDEAVAEF 582
           + +IA+A  EQ +V   +++++  +N I+ N   SA Q     D +++ +  +   +++F
Sbjct: 573 NIQIASAANEQCAVSAEINKNVNNINDIATNATESAMQTARAGDELAQLSMRLTTLLSQF 632

Query: 583 R 583
           +
Sbjct: 633 K 633



 Score = 40.0 bits (92), Expect = 3e-07
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 30/230 (13%)

Query: 355 ISEISESTNIAVDGVNQAARNAEQGRSVVVTTVKNIDLLSSTLQKSQHSIGSLNAFVEKI 414
           I+E +++ N   +G     R  E         VK+ D ++   Q       + N F EKI
Sbjct: 309 IAETTDALNDIAEGEGDLTRRIE---------VKSKDEMAQLAQ-------AFNRFAEKI 352

Query: 415 GGAVSIIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTHQSTEEITRVV 474
              V+    +++ T+LLA +A   +A           +  E + +A R H  TE++   +
Sbjct: 353 HATVA---QVSDSTSLLATSAEEMSA-----------ITHETQQMANRQHLETEQVATAM 398

Query: 475 SNIQSQMSQVVDDIDLCNNQGQETLSASRQLDESLQQILRDMHTIQDNSQRIAAAIEEQG 534
           + + + + +V  +     +       ++ Q    +++++  +  + D   + A AI E  
Sbjct: 399 NEMAATVQEVAHNATDAADAATHASESTEQGKLLVEKVISTISLLADEIAQAANAINELE 458

Query: 535 SVMNHVSESIAELNTISENNMRSAQQCLTEVDTVSRQAHAMDEAVAEFRT 584
                +   +  +  I++     A     E      Q         E RT
Sbjct: 459 RNTTQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRT 508