Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  141 bits (356), Expect = 5e-38
 Identities = 96/288 (33%), Positives = 158/288 (54%), Gaps = 21/288 (7%)

Query: 253 IRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSH 312
           +R  + ++  SA  LG  A +L   TQE  + L  Q++ I+    A + + +A E V+ +
Sbjct: 259 LRQTIEQIAGSATQLGAAAQELSAVTQESSRGLQQQHNEIEQAATAVNEMTAAVEEVARN 318

Query: 313 THSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEI 372
             S  +  +Q      E +  +  T   +Q +    ++ A     L+ Q + +G+++  I
Sbjct: 319 AVSTSEASNQSTQAAQEGRTRVVETVDAIQTMTHDVQATASMIEGLAVQGRDIGKVLDVI 378

Query: 373 GGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTI 432
             IAEQTNLLALNAAIEAARAGE GRGFAVVADEVRAL+ RT ++TQ+    I+ M++ I
Sbjct: 379 RAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTAQSTQE----IEKMVAGI 434

Query: 433 EAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGE-------VASAAQHQR 485
           +   G    S  Q+ Q  Q   +TL+  +     +  + + I +       +ASA++ Q 
Sbjct: 435 QNGTGQAVQSMQQSNQRTQ---STLEMARAAGVALEQITQSIHQINERNLVIASASEEQA 491

Query: 486 ELTCEVNQHIHSIASVATQN-------SAATHTVEQLAMAMSGKVAEF 526
           +++ EV++++ +I  +ATQ+       S ATH + +LA+ ++  VA F
Sbjct: 492 QVSREVDRNLVNIRDLATQSASGAKQTSDATHELSRLAVGLNAMVARF 539



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 22/195 (11%)

Query: 341 LQRLATQAESAALTTLKLSDQAQQVGQLMTEIG--------GIAEQTNLL--ALNAAIEA 390
           LQ LAT   S   T  +++  A Q+G    E+         G+ +Q N +  A  A  E 
Sbjct: 249 LQALATMQVSLRQTIEQIAGSATQLGAAAQELSAVTQESSRGLQQQHNEIEQAATAVNEM 308

Query: 391 ARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTIEAWRGDITASRDQTEQCA 450
             A E+    AV   E    S ++ +A Q+ +T +   +  I+    D+ A+    E  A
Sbjct: 309 TAAVEEVARNAVSTSEA---SNQSTQAAQEGRTRVVETVDAIQTMTHDVQATASMIEGLA 365

Query: 451 QDANTTLQQLQDVECVMSDMLRVIGEVAS-AAQHQRELTCEVNQHIHSIASVATQNSAAT 509
                   Q +D+  V+ D++R I E  +  A +         +     A VA +  A  
Sbjct: 366 -------VQGRDIGKVL-DVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALA 417

Query: 510 HTVEQLAMAMSGKVA 524
           H   Q    +   VA
Sbjct: 418 HRTAQSTQEIEKMVA 432