Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  246 bits (627), Expect = 2e-69
 Identities = 173/535 (32%), Positives = 278/535 (51%), Gaps = 30/535 (5%)

Query: 17  MSAYTPSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHAS 76
           M    P  Q E      ++L+STTDL   ITYCND F  ++GF  +EL+G+ HN+VRH  
Sbjct: 1   MRVNMPITQTERTFPASERLISTTDLNSHITYCNDAFVTLSGFTREELVGQPHNLVRHPD 60

Query: 77  MPKAAFADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAER 136
           MP + FA MW  +KQG  W G+VKNR+K G +YWV AYVT +Y+ G++ GY+SVR    R
Sbjct: 61  MPASVFAHMWETIKQGKPWMGVVKNRSKQGDYYWVSAYVTAVYENGRIVGYESVRSLPTR 120

Query: 137 KWVEIATKAYQALLAAEKAGKKIQFKLHTSLRYALLLGALMSPALAHGFQAPEQWQWLAS 196
             V  A   Y  L A + A        +  +R   ++  L + ALA G    +    +  
Sbjct: 121 DQVRRAEALYARLRAGKAAVSASSSAAYHLIRQLPMI--LCALALAVGVYLLDDLPSIIM 178

Query: 197 L-LPAGVLGLLFRQELVRTPQQLKQWQNEY-----DSISRLIYSGADAFSVADYHLKMAS 250
           + +   VLG+      VR    +++   E+      ++  L YS +     A   L M S
Sbjct: 179 IPIVMVVLGVFLE---VRQRSSIRKTLEEHPKAFTSALIALTYSDSRG-PQAQLDLAMLS 234

Query: 251 --ARIRTILGRMMDSARPLGELAN---QLHLTTQE-VHQALAAQNSNIQAVTQATDAVES 304
             AR++T L R+ D+   + + A    QL L   E + Q  +  + +  A+ Q    ++ 
Sbjct: 235 EEARLQTALTRLADTGESVRQHAGRSAQLSLRQAESLDQQRSEADQSATAINQMAATIQE 294

Query: 305 AAERVSSHTHSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQ 364
               V +  H+A +     Q        S+      ++ +AT          +L+D  Q 
Sbjct: 295 VTHNVQNTAHAAEEADKLAQQGRGLADESLLA----IRHMATSVTDIGNAVGELADATQS 350

Query: 365 VGQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTS 424
           +G ++  I  IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR+L++RTQ +T+QIQ  
Sbjct: 351 IGSVVDVITSIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQSSTEQIQQI 410

Query: 425 IDTMLSTIEAWRGDITASRDQTEQCAQDANTTLQQLQD-VECVMSDMLRVIG---EVASA 480
           I ++    +  R   TAS+   EQ +Q++  +++ +Q  ++ +   + R+ G   ++ASA
Sbjct: 411 ITSLRDGAD--RAVKTASKG--EQISQESVASVEAVQKALDGISQSVTRITGMSQQMASA 466

Query: 481 AQHQRELTCEVNQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQFAQ 535
           ++ Q  +   ++Q I  IA +  ++++      Q++  +        +L+++F++
Sbjct: 467 SEEQSHVAETISQQITRIAQLCDESASQAQQGSQISSELEEMAQYLHSLAERFSR 521