Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  256 bits (653), Expect = 2e-72
 Identities = 166/490 (33%), Positives = 247/490 (50%), Gaps = 8/490 (1%)

Query: 22  PSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAA 81
           P  Q E       +L+STTD +G ITYCND F  I+G+   ELLG  HN VRH  +P A 
Sbjct: 6   PITQHERTFPAEQRLISTTDTRGTITYCNDAFVDISGYSEAELLGAAHNTVRHPDVPPAV 65

Query: 82  FADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVEI 141
           F  MW  LK G  W GIVKNR K+G  YWV+AYVTP+ +  Q+ G++SVR+K   + V  
Sbjct: 66  FEHMWTTLKSGQPWMGIVKNRCKNGDHYWVNAYVTPVLENRQVVGFESVRIKPTAEQVRR 125

Query: 142 ATKAYQALLAAEKA--GKKIQFKLHTSLRYALLLGALMSPALAHGFQAPEQWQW-LASLL 198
           A   Y  L   + A  G+     +       +L+  L   +   G      W + LA+ L
Sbjct: 126 AEALYTRLNKGKSAVPGRDKWLPVLQDWLPFILVSQL---SFLIGVWLNSHWGFALAAAL 182

Query: 199 --PAGVLGLLFRQELVRTPQQLKQWQNEYDSISRLIYSGADAFSVADYHLKMASARIRTI 256
             P G+LGL ++Q   +   +L +       I+++        +  +  +    AR++T 
Sbjct: 183 SVPLGLLGLSWQQRGTKRLLRLAEQTTSDPLIAQMYTDSRGPQARLEMSILSQEARMKTC 242

Query: 257 LGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSHTHSA 316
           L R+ D+A  L   A Q +         L  Q    + V  A + + +  + V+SH + A
Sbjct: 243 LTRLQDTAEHLNSQARQSNSLANASSIGLERQRVETEQVAAAINQMAATTQEVASHVNRA 302

Query: 317 HQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEIGGIA 376
                Q  +     +     T + +QRL+T      LT  +L+  + ++G ++  I GIA
Sbjct: 303 ADATQQANELTRRGRDIAGETREAIQRLSTSVGETGLTVTRLAKDSDEIGGVVDVIKGIA 362

Query: 377 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTIEAWR 436
           +QTNLLALNAAIEAARAGE GRGFAVVADEVR L+ RT  +T QI   I  +  T     
Sbjct: 363 DQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHGLIAKLQQTATDAV 422

Query: 437 GDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCEVNQHIH 496
             +   R Q E+         Q L  +   ++++  +  ++A+A + Q  +  E+N++I 
Sbjct: 423 HTMDTGRRQAEEGVARVLEADQALVGISEAVANITDMTTQIATATEEQSAVAEEINRNIA 482

Query: 497 SIASVATQNS 506
           +IAS+A Q S
Sbjct: 483 TIASLADQTS 492