Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  134 bits (337), Expect = 9e-36
 Identities = 91/303 (30%), Positives = 159/303 (52%), Gaps = 6/303 (1%)

Query: 234 SGADAFSVADYHLKMASARIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQ 293
           SG D        L      +R+ + ++ DS+  L   + ++   T++    L +QN  + 
Sbjct: 238 SGTDEAGRLLSALATMQQNLRSTIMQIADSSSQLAAASEEMTAVTEQSSLGLVSQNDEVN 297

Query: 294 AVTQATDAVESAAERVSSHTHSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAAL 353
               A   + +A + V+ +  SA +   + Q +       ++ T +++++L++     + 
Sbjct: 298 QAATAVTEMSAAVDEVARNAESASEESRKGQGYTEVGLERVSQTLKSIEKLSSNVRDTSE 357

Query: 354 TTLKLSDQAQQVGQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSAR 413
               LS++AQ + +++  I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRAL+ R
Sbjct: 358 QITGLSNRAQNISKVVEVIRAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHR 417

Query: 414 TQRATQQIQTSIDTMLSTIEAWRGDITASRD---QTEQCAQDANTTLQQLQDVECVMSDM 470
           TQ +TQ+I+  I  + +  +     +  SR+   ++   A DA+++L Q+      +++ 
Sbjct: 418 TQVSTQEIEQMIQAIQNDSDQAVKAMATSRELAAESLSVAGDASSSLDQIATAITGINER 477

Query: 471 LRVIGEVASAAQHQRELTCEVNQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALS 530
             +I   A+A++ Q  +  EV++++ SI  +A+Q+SA           MS        L 
Sbjct: 478 NILI---ATASEEQAHVAREVDRNLVSIRELASQSSAGASQTASACNEMSKLAVSLNQLV 534

Query: 531 KQF 533
            +F
Sbjct: 535 NRF 537