Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  149 bits (375), Expect = 4e-40
 Identities = 96/311 (30%), Positives = 159/311 (51%), Gaps = 13/311 (4%)

Query: 226 DSISRLIYSGADAFSVADYHLKMASARIRTILGRMMDSARPLGELANQLHLTTQEVHQAL 285
           D   +L  +G D F+    +       +R+++  ++D +  L   A +    T +    +
Sbjct: 364 DLTHKLDDTGHDEFAELSRNCNRLVDSLRSLIASILDRSNQLAAAAEETSAITSQTTIGI 423

Query: 286 AAQNSNIQAVTQATDAVESAAERVSSHTHSAHQLIDQVQDHCAETKHSINVTHQN---LQ 342
             Q S +  V  AT  + S+A +V+    SA   + Q++    ET+H   +  +N   + 
Sbjct: 424 QEQKSQVDQVATATTELSSSAHQVNM---SADDALSQIKQADEETQHMRTIADENKRTIL 480

Query: 343 RLATQAESAALTTLKLSDQAQQVGQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFAV 402
            LA +   A+    K+   +  +G ++  I GIAEQTNLLALNAAIEAARAGEQGRGFAV
Sbjct: 481 SLADEVAKASKVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAV 540

Query: 403 VADEVRALSARTQRATQQIQTSIDTMLSTIEAWRGDITASRDQTEQCAQDANTTLQQLQD 462
           VADEVR+L++RTQ +T++IQ  I+ +    +     +   ++Q + C +      Q LQ 
Sbjct: 541 VADEVRSLASRTQDSTREIQQMIEVLQQGTQQAVAVMQLGQNQAQSCVEKTEQANQALQT 600

Query: 463 VECVMSDMLRVIGEVASAAQHQRELTCEVNQHIHSIASV-------ATQNSAATHTVEQL 515
           +   +         +A AAQ Q  ++ +V++ +  IA++       A Q + ++H V +L
Sbjct: 601 ISHSVHKAYDAGTHIAQAAQEQNLVSQQVSEKLEHIAAISEETALGAEQTAKSSHEVARL 660

Query: 516 AMAMSGKVAEF 526
           A  +   V EF
Sbjct: 661 AEELQSSVKEF 671