Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 517 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  350 bits (898), Expect = e-101
 Identities = 196/522 (37%), Positives = 298/522 (57%), Gaps = 11/522 (2%)

Query: 15  AEMSAYTPSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRH 74
           + MS + P  Q+E+ +   D+L+STTDL+GVITY N  F +I+G+   EL+G +HNIVRH
Sbjct: 2   SNMSKHRPINQREIRLNQDDELISTTDLRGVITYANPRFIQISGYSKQELVGHSHNIVRH 61

Query: 75  ASMPKAAFADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKA 134
             MP  AFA++W  LK G +WRG+VKNR K G FYWVDA+VTPI++ G++ GYQSVR   
Sbjct: 62  PDMPADAFAELWSKLKAGQSWRGLVKNRAKDGSFYWVDAFVTPIFEAGKIVGYQSVRRMP 121

Query: 135 ERKWVEIATKAYQALLAAEKAGKKIQFKLHTSLRYALLLGALMSPA---LAHGFQAPEQW 191
           + +WV  AT+ YQ L    + GK +    H SL    ++ AL++     +      P   
Sbjct: 122 QTEWVNRATRIYQRL----QQGKGLP--RHLSLGQKRIISALVATTGLGICGLLWGPGVM 175

Query: 192 QWLASLLPAGVLGLLFRQELVRTPQQLKQWQNEYDSISRLIYSGADAFSVADYHLKMASA 251
             +A  L  GV   +F  E  R P +L   Q E+DS+SR +Y G D  S+ D+ L +  A
Sbjct: 176 --VAGALLMGVNLAIFYDEAFRIPARLMALQQEFDSVSRHVYCGYDTSSILDFQLLLQQA 233

Query: 252 RIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSS 311
           R++ +LGR  D A  L  +A  L + + +   +L  Q+  ++ +  A + + +    V+ 
Sbjct: 234 RMQGVLGRSQDQALQLQRIAENLVVASGQTEASLDMQHRQLEQLACAMEEMTATIGEVAL 293

Query: 312 HTHSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTE 371
           ++    + I   Q  C    H+++     +  LA     AA    KL+ +A++V   M+E
Sbjct: 294 NSRQTSEKIRDAQQLCQHNAHAMSEKRVRIANLADAVAEAASNAEKLNREAEKVASAMSE 353

Query: 372 IGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLST 431
           I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALS+RTQ++T  I  S++ M S 
Sbjct: 354 IDAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSSRTQQSTMSISRSVEQMFSM 413

Query: 432 IEAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCEV 491
           + +W  ++  S+ + E CA+    ++  +Q++   +S++     + A A+  Q  +  ++
Sbjct: 414 LGSWAEEMGRSQQEAEACARAIAESVDDIQNIHVQISEIHDFAEQNAVASAQQETVVADM 473

Query: 492 NQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQF 533
           NQ++  IA  A  N AA   V +  + +     +  +L + F
Sbjct: 474 NQNLQQIAHGANDNLAAMSLVGKATLELQSSADKASSLRQTF 515



 Score = 31.6 bits (70), Expect = 8e-05
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 14/150 (9%)

Query: 392 RAGEQGRGFAVVADEVRALSARTQ-------RATQQIQTSIDTMLSTIEAWRGDITASRD 444
           R+ +Q      +A+ +   S +T+       R  +Q+  +++ M +TI    G++  +  
Sbjct: 241 RSQDQALQLQRIAENLVVASGQTEASLDMQHRQLEQLACAMEEMTATI----GEVALNSR 296

Query: 445 QTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCEVNQHIHSIASVATQ 504
           QT +  +DA    Q  Q     MS+    I  +A A         ++N+    +AS  ++
Sbjct: 297 QTSEKIRDAQ---QLCQHNAHAMSEKRVRIANLADAVAEAASNAEKLNREAEKVASAMSE 353

Query: 505 NSAATHTVEQLAMAMSGKVAEFGALSKQFA 534
             A       LA+  + + A  G   + FA
Sbjct: 354 IDAIAEQTNLLALNAAIEAARAGEQGRGFA 383