Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  145 bits (366), Expect = 4e-39
 Identities = 97/330 (29%), Positives = 168/330 (50%), Gaps = 8/330 (2%)

Query: 194 LASLLPAGVLGLLFRQELVRTPQ----QLKQWQNEYDSISRLIYSGADAFSVADYHLKMA 249
           L + + + VLG+   + +++       QL   Q + D          D   +    L   
Sbjct: 196 LVAAIASIVLGVWINRSVMKPINHIRTQLHTIQQDSDLTVTFEQLNKDELGLISTGLNDV 255

Query: 250 SARIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERV 309
              +R IL  + ++A  + + A  L+  TQ  +  +  Q +  +    A + + +    V
Sbjct: 256 FRHLRGILKGVAEAANSVSDSALALNEFTQISNARIQQQQAETEQTATAMNEMTATVNEV 315

Query: 310 SSHTHSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLM 369
           +  T +A           A     + ++  ++Q L+ Q +S +     LS ++Q +G ++
Sbjct: 316 AQSTTAAADSARNADRFAANGNDIVQLSISSMQALSMQIQSTSEVITHLSHESQHIGSVL 375

Query: 370 TEIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTML 429
           + I GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+L+ RTQ ATQ+I+T I+T+ 
Sbjct: 376 SVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQEATQEIETMIETLQ 435

Query: 430 STIEAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTC 489
           S +      +     Q +   Q  N   + LQ++   + ++  +   +A+AA+ Q  +  
Sbjct: 436 SGVNEAVTAMDVGIKQVDDANQQTNKAGEALQEIVASVDNITEMNTHIATAAEEQSSVAE 495

Query: 490 EVNQHIHSIASVATQNSAAT----HTVEQL 515
            +N+ I +I+ +A+Q++ +     H++ QL
Sbjct: 496 SINRSIIAISDIASQSTESALELGHSIAQL 525