Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella loihica PV-4

 Score =  250 bits (639), Expect = 8e-71
 Identities = 174/522 (33%), Positives = 260/522 (49%), Gaps = 23/522 (4%)

Query: 22  PSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAA 81
           P    EV++ D D L+STTDLKG I Y N+ FCRI GF  +EL+ + HNIVRH  MPKAA
Sbjct: 6   PVIDNEVVLTDDDILLSTTDLKGNIGYANEDFCRICGFSEEELVRQPHNIVRHPDMPKAA 65

Query: 82  FADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVEI 141
           FA +W  L Q  +W G+VKNR K G +YWV+AYV P+ + GQ+  YQSVR +A +  VE 
Sbjct: 66  FAILWQRLAQKQSWLGVVKNRCKDGSYYWVNAYVAPVMENGQVKEYQSVRRRASQAQVER 125

Query: 142 ATKAYQALLAAEKAGKKIQFKLHTSLRYALLLGALMSPALAHGFQAPEQWQWL--ASLLP 199
           A+  YQ+L  +E+  +    KL    +  L L A++   LA G      W  L  A LL 
Sbjct: 126 ASDIYQSLNKSEQRSEIKDAKLGYGGK--LTLFAVLCLLLAIGLSNISPWLALICAPLLA 183

Query: 200 AGVLGLLFRQELVRTPQQLKQWQNEYDSISRLIYSG-ADAFSVADYHLKMASARIRTILG 258
            G + LL         Q L       D ++R IY+G  D      + ++  +A I  ++G
Sbjct: 184 IG-MRLLLAPLRALNDQALTIVS---DPVARHIYAGRRDELGNIQFAMEFTTAEIAGVVG 239

Query: 259 RMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSHTHSAHQ 318
           RM D++  +   ++ L  +          QN        A + + ++   +         
Sbjct: 240 RMTDASSVIARDSDALLGSITATADRADGQNQQTAQAAAAVEELTASFNELGQQLKQVSA 299

Query: 319 LIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEIGGIAEQ 378
            ++  Q    +    ++    ++  L  +  + A    ++   +  + Q++  I  IAEQ
Sbjct: 300 DVEASQAAVLQGYEQLDAVVASIDELHNEVGNFAQVVSEIEHDSVAINQVLEVITKIAEQ 359

Query: 379 TNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTIEAWRGD 438
           TNLLALNAAIEAARAGE GRGFAVVADEVR LSART  +T QI   I     +       
Sbjct: 360 TNLLALNAAIEAARAGESGRGFAVVADEVRQLSARTADSTSQIDAIIAKFQQSTANAANT 419

Query: 439 ITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEV-------ASAAQHQRELTCEV 491
           +TA + Q  Q        +Q ++  E V ++++  I ++       A A Q Q     ++
Sbjct: 420 LTAGQRQATQ-------AVQLVKQAEAVFAELVTRIDKINQMTELSADAMQEQGLAAVDI 472

Query: 492 NQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQF 533
           +  + +I+ +A++  A +    QL    S K  E   L++QF
Sbjct: 473 SDSLQAISELASEGFAQSQADRQLGERSSLKSMESRQLARQF 514