Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella loihica PV-4

 Score =  240 bits (612), Expect = 1e-67
 Identities = 176/525 (33%), Positives = 257/525 (48%), Gaps = 28/525 (5%)

Query: 22  PSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAA 81
           P  Q+E +      L+STTDLKG I Y N  F +++ F  DEL  + HNIVRH  MP AA
Sbjct: 6   PVTQKEKVFAADTILLSTTDLKGKIKYANAGFTQVSEFTQDELYRQPHNIVRHPDMPPAA 65

Query: 82  FADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVEI 141
           F  MW  LKQG  W GIVKNR KSG  YWV+AYV P+++ GQ+  YQSVR KA +  ++ 
Sbjct: 66  FESMWSRLKQGKPWIGIVKNRAKSGDHYWVNAYVAPVFEGGQVHEYQSVRRKATQAQIDN 125

Query: 142 ATKAYQALLAAEKAGKKIQFKLHTSLRYALLLGALMSPALAHGFQAPEQWQWLASLLPAG 201
           A    QAL     AGK+ +      L +   LG ++  +L  G         LA LL  G
Sbjct: 126 A----QALYGELNAGKRPRALKAARLGFGKRLGLVLLLSLGVGVALAGYSPLLALLLATG 181

Query: 202 VLGLLFRQELVRTPQQLKQWQNEY--DSISRLIYSG-ADAFSVADYHLKMASARIRTILG 258
            LGL     +++    L +  +    D ++  +Y G  D      + L+         +G
Sbjct: 182 -LGLGGLSLILKPFNALVEQASGIIDDPLATAVYCGRQDELGKLSFALQYLLTETGGAVG 240

Query: 259 RMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSH-THSAH 317
           RM DSA  + EL+  L+ T         +Q+        A + + ++   VS +  H+A 
Sbjct: 241 RMADSAESIQELSVSLNETISHTRDRADSQSQQTSQAATAVEEMSASFNEVSQNIQHAAE 300

Query: 318 QLIDQVQDHCAETKHSINV-THQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEIGGIA 376
           ++   +    AE  H + V   Q ++ L  +  + +     +   +Q++ +++  I GIA
Sbjct: 301 EM--SMSHEAAEKGHELLVEVIQAIKGLHQEVSNFSAVVASIEQDSQEINEVLEVIRGIA 358

Query: 377 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTIEAWR 436
           EQTNLLALNAAIEAARAGE GRGFAVVADEVR LS+RT  +T  I+  +           
Sbjct: 359 EQTNLLALNAAIEAARAGESGRGFAVVADEVRQLSSRTSESTSHIEAIVSKF-------- 410

Query: 437 GDITASRDQTEQCAQ-DANTTLQQLQDVECVMSDMLRVIGEV-------ASAAQHQRELT 488
            D T    QT Q  Q  A  ++   Q V+    ++   I ++       A+A   Q  + 
Sbjct: 411 RDSTLKASQTMQAGQRQAQHSVGLAQQVDASFEELRASIDKINQMSDANAAAMSQQTAVA 470

Query: 489 CEVNQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQF 533
            E++Q I  I  +A  + + T    +    +    A+   LS+QF
Sbjct: 471 SEISQSIQLINELALASLSQTQAAAERGGQVERLSAKTHHLSQQF 515