Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  139 bits (350), Expect = 3e-37
 Identities = 94/345 (27%), Positives = 168/345 (48%), Gaps = 7/345 (2%)

Query: 193 WLASLLPAGVLGLLFRQELVRTPQQLKQWQN----EYDSISRLIYSGADAFSVADYHLKM 248
           WL  +L   +LG++ R         +  ++N    E D   RL  SG D           
Sbjct: 205 WLPVIL---ILGVISRSISAPMADTIAAFENIARGEGDLTLRLEESGRDELKQVAASFNE 261

Query: 249 ASARIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAER 308
             A+I+ ++  +  S     ELA  L   + +     A   +  Q+V  A + +  A+  
Sbjct: 262 FVAKIQALVNSVSASVTHSRELAEGLADISAQASMVTANMQAETQSVATAINEMSMASSE 321

Query: 309 VSSHTHSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQL 368
           V+S+   A            +T   ++     ++ L+ + E  A     L   + ++GQ+
Sbjct: 322 VASNAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSNELEVTADEAQALQISSGKIGQI 381

Query: 369 MTEIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTM 428
           +  I GIAEQTNLLALNAAIEAARAGE GRGFAVVADEVR L++RTQ +TQ+I   I+ +
Sbjct: 382 LDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRTQESTQEINAIIEAI 441

Query: 429 LSTIEAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELT 488
            +++++    +  ++ Q+EQ   + +  ++ LQ ++  +  +  +  ++A+A + Q  + 
Sbjct: 442 RASVDSVNASVARAKAQSEQTVGETSQVVEALQTIKSSIRQISDMNIQIATATEEQSAVI 501

Query: 489 CEVNQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQF 533
            E+N ++  I  ++ +N   +  +   +  +    A+  +L   F
Sbjct: 502 AELNMNVTRINDISLENQQKSEEIGSTSEQIKSGSADLESLISTF 546