Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  232 bits (591), Expect = 3e-65
 Identities = 165/542 (30%), Positives = 254/542 (46%), Gaps = 41/542 (7%)

Query: 22  PSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAA 81
           P  Q EV       +VS TDLKG+ITY NDTF  ++GF  DEL+GKNHN+VRH  MP AA
Sbjct: 6   PVTQVEVPFIKGKYIVSKTDLKGIITYANDTFVELSGFTRDELIGKNHNLVRHPDMPPAA 65

Query: 82  FADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVEI 141
           FAD+W  +K+G  WRGIVKNR K+G  YWVDA V P+ Q+GQ  GY SVR +  R  V+ 
Sbjct: 66  FADLWISVKEGRPWRGIVKNRCKNGDHYWVDALVVPVRQKGQTIGYMSVRTEPSRAQVQS 125

Query: 142 ATKAYQAL------LAAEKAGKKIQFKLHTS------LRYALLLGALMSPALAHGFQAPE 189
           A   Y  L      +      +K+  +   +      +   LL G  +      GF A  
Sbjct: 126 AEALYAKLGKGGGAIPRPGGWRKVSLRKKMAGLTLFVMAAQLLTGIGVWFGSGIGFSADS 185

Query: 190 QWQWLASL----LPAGVLGLLFRQELVR----TPQQLKQ----------WQNEYDSISRL 231
               +  L    L AG + +  +Q + R    T   L +          W +  D + +L
Sbjct: 186 IVALVQILSLTGLVAGAVQIGLQQGIFRAIDATNSSLDRVAQGDLSEDLWHDRLDEVGKL 245

Query: 232 IYSGADAFSVADYHLKMASARIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSN 291
                D+      HLK+       +L  + ++A  +     QL+L    V     +Q+ +
Sbjct: 246 ----QDSLLTTQAHLKV-------MLAEIAEAANRVSGNTTQLNLEMSSVSSQSESQSDS 294

Query: 292 IQAVTQATDAVESAAERVSSHTHSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESA 351
           +  +  + + + +  E+VS+        +   ++  A  +  +    +  + + +  ++A
Sbjct: 295 VSRIAASMEEMSATVEQVSADAQETASAVGTTRERIAGVEQRMIQGREASRAVVSAVDTA 354

Query: 352 ALTTLKLSDQAQQVGQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALS 411
           + T   L     ++G +   I  IA+QTNL+ALNAAIEAARAGE GRGFAVVADEVR L+
Sbjct: 355 SNTMATLFQSLNRIGVVTQGIQEIADQTNLIALNAAIEAARAGEAGRGFAVVADEVRKLA 414

Query: 412 ARTQRATQQIQTSIDTMLSTIEAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDML 471
            RT+  T +I   +  +    E+  G I ++  Q     +    T   L +V      + 
Sbjct: 415 ERTRLQTAEIAEMVTEIQKITESAVGSIESAGAQVGHNDEAMGETGVSLAEVVQDGQHID 474

Query: 472 RVIGEVASAAQHQRELTCEVNQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSK 531
            +   +A A   Q + + +V   +  IA++  +N+AA    E+    +     E   L  
Sbjct: 475 EMARHIAQATVQQSQASQDVAMSVSEIAALIEENAAAIGEAERNVQQLLATAGELRNLIA 534

Query: 532 QF 533
            F
Sbjct: 535 YF 536