Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 698 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  154 bits (388), Expect = 1e-41
 Identities = 152/542 (28%), Positives = 245/542 (45%), Gaps = 74/542 (13%)

Query: 17  MSAYTPSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHAS 76
           M    P   QE+    +  LVS TDLKG+IT+ ND F  I+GF  DEL+G +HN+VRH  
Sbjct: 1   MKINLPVTNQEIPFPPNQYLVSKTDLKGIITHANDAFVEISGFSRDELIGASHNLVRHPD 60

Query: 77  MPKAAFADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAER 136
           MP  AFAD+W  +K G+ WRG+VKNR+K GGFYWV+A+V P+ + G   GY SVR    R
Sbjct: 61  MPPQAFADLWRTVKSGNPWRGLVKNRSKDGGFYWVEAFVVPVVKNGHTEGYMSVRTPPAR 120

Query: 137 KWVEIATKAYQALLAAEKAG-KKIQFKLHTSLRYALLLGALMSPALAHGFQAPEQWQWLA 195
             V+ A   YQ L   + A   +      + L     LGA+M+  +A             
Sbjct: 121 DKVQAAEALYQRLRENKNASLPQSAAGFWSRLSVKGRLGAMMAAFVA------------I 168

Query: 196 SLLPAGVLGLLFRQELVRTPQQLKQWQNEYDSISRLIYSGADAFSVADYHLKMASARIRT 255
           + +  G+ GL   QE   + Q+  Q + E  ++            V +    +   R + 
Sbjct: 169 TAVVTGI-GLSGLQEGNASLQEQYQRKLEPTTV------------VNEVLALLGENRSQI 215

Query: 256 ILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSHTHS 315
           +L    D   P  ELA +LH    EVH  L    +N Q +    +A++         +  
Sbjct: 216 MLALQHD---PKSELA-KLHDHGLEVH--LEKTLANRQQINAQLEALQKL-----PLSEK 264

Query: 316 AHQLIDQVQDHCAETKHSINVTHQNLQRLATQA----ESAALTTLKLS---DQAQQVGQ- 367
             QL++Q+     E +   +    N  R A +A    +++ L   K++    Q QQ G+ 
Sbjct: 265 ERQLVEQL----GEARKKFSAEGVNAARDALKAGDFHQASVLLLTKINPIYGQVQQAGKA 320

Query: 368 LMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDT 427
           L+ E+   A         A  E A+A  +   +A+    + AL+         ++  ++ 
Sbjct: 321 LVDELKASA--------RADFERAQARYENILWAMALATLAALALAVVGGWLLVRAIVNP 372

Query: 428 MLSTIEAWR----GDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQH 483
           M   I+ ++    GD+T+  D + +   +A   L QL  ++  +  ML  I E AS    
Sbjct: 373 MRQAIDTFKLIAEGDLTSDIDISRR--DEAGQLLCQLATMQATLKAMLDQIQE-ASRQMD 429

Query: 484 QR--ELTCEV-------NQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQFA 534
           QR  +L  EV        Q +  + S+A      + +V+++A   +G+ A     S++  
Sbjct: 430 QRCSQLESEVALVAAKSQQQLDDVQSIAAATEEFSQSVQEVA-GHAGETASAAQNSERLV 488

Query: 535 QK 536
           ++
Sbjct: 489 EE 490



 Score =  114 bits (285), Expect = 1e-29
 Identities = 108/397 (27%), Positives = 182/397 (45%), Gaps = 25/397 (6%)

Query: 144 KAYQALLAAEKAGKKIQFKLHTSLRYALLLGALMSPALAHGFQAPEQWQWLASLLPAGVL 203
           +A +AL+   KA  +  F+     RY  +L A+   ALA           LA+L  A V 
Sbjct: 316 QAGKALVDELKASARADFE-RAQARYENILWAM---ALAT----------LAALALAVVG 361

Query: 204 GLLFRQELVRTPQQLKQWQN---EYDSISRLIYSGADAFSVADYHLKMASARIRTILGRM 260
           G L  + +V   +Q         E D  S +  S  D        L    A ++ +L ++
Sbjct: 362 GWLLVRAIVNPMRQAIDTFKLIAEGDLTSDIDISRRDEAGQLLCQLATMQATLKAMLDQI 421

Query: 261 MDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSH---THSAH 317
            +++R + +  +QL      V      Q  ++Q++  AT+    + + V+ H   T SA 
Sbjct: 422 QEASRQMDQRCSQLESEVALVAAKSQQQLDDVQSIAAATEEFSQSVQEVAGHAGETASAA 481

Query: 318 QLIDQ-VQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEIGGIA 376
           Q  ++ V++   +   S+ VT+    R+      ++ T  +L+    Q+GQ+   I  IA
Sbjct: 482 QNSERLVEESNTQIGRSMAVTN----RVVEAVTGSSATLHELNTAIDQIGQITQVIKEIA 537

Query: 377 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTIEAWR 436
           +QTNLLALNAAIEAARAGE GRGFAVVADEVR L+ RT  +T  I  +I  +        
Sbjct: 538 DQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERTTTSTADITGNIGAIQGATHEAV 597

Query: 437 GDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCEVNQHIH 496
             +  +  + E+       ++  L+ +      +  +  +++ A+Q Q   + EVN  + 
Sbjct: 598 NRMEQAVREVEEGIGMMRESVAGLEGITAASQQVSAMARQISEASQQQSIASQEVNGSME 657

Query: 497 SIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQF 533
            I+ +  QN+A     ++   A+     +  A+   F
Sbjct: 658 HISVLIEQNTATAQEAQRATEALVSTAEDLRAILASF 694