Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 955 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  135 bits (341), Expect = 5e-36
 Identities = 71/140 (50%), Positives = 84/140 (60%), Gaps = 1/140 (0%)

Query: 17  MSAYTPSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHAS 76
           M    P    EV + D   +VS TDLKG ITY N  F  I+GF   EL+G+ HNIVRH  
Sbjct: 1   MRTNLPVTNVEVPLRDDTLIVSKTDLKGQITYINRDFIEISGFTEAELIGEPHNIVRHPD 60

Query: 77  MPKAAFADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAER 136
           MP  A+ADMW HLK G  W G+VKNR K+G  YWV+A  TPI +  Q+ GY SVR K  R
Sbjct: 61  MPSEAYADMWTHLKAGRPWTGLVKNRCKNGDHYWVEANATPIRENDQVVGYMSVRRKPSR 120

Query: 137 KWVEIATKAYQALLAAEKAG 156
             VE A  AY+ L    +AG
Sbjct: 121 DQVEAAENAYR-LFRENRAG 139



 Score = 94.4 bits (233), Expect = 2e-23
 Identities = 71/279 (25%), Positives = 125/279 (44%), Gaps = 21/279 (7%)

Query: 262 DSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSHTHSAHQLID 321
           D A   G+L N  + T +++ + +       +A+  A   + S    +SS T      ++
Sbjct: 627 DYAGTFGQLKNDANSTVEQLKEIVERIKGATEAINTAAQEIASGNTDLSSRTEEQASSLE 686

Query: 322 QVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEI--------- 372
           +      +   ++     N +     A  A    +K  +  +QV Q M  I         
Sbjct: 687 ETASSMEQLTSTVKQNADNARTANELASGAQQVAVKGGEVVEQVVQTMGAIHHSSSKIAD 746

Query: 373 -----GGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDT 427
                 GIA QTN+LALNAA+EAARAGEQGRGFAVVA EVR L+ R+  A ++I+  I  
Sbjct: 747 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKALISD 806

Query: 428 MLSTIEAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQREL 487
            +  +E        SR   +   +     +  ++ V  +M+D+     E ++  +     
Sbjct: 807 SVEKVE------NGSR-LVDSAGRTMEEVVTSIKRVAKIMADIAEASREQSAGIEQVGLA 859

Query: 488 TCEVNQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEF 526
             ++++     A++  + +AA  ++E+ A  +   V+ F
Sbjct: 860 VSQMDEVTQQNAALVEEAAAAAESLEEQAHGLMEAVSVF 898