Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  143 bits (361), Expect = 2e-38
 Identities = 96/303 (31%), Positives = 151/303 (49%), Gaps = 13/303 (4%)

Query: 234 SGADAFSVADYHLKMASARIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQ 293
           S  D F+    +       +R ++  ++D +  L   A Q    T +    +  Q S + 
Sbjct: 372 SSQDEFAELAKNCNRLVDSLRGLIAGILDRSNQLAAAAEQTSAITAQTTTGIQEQKSQVD 431

Query: 294 AVTQATDAVESAAERVSSHTHSAHQLIDQVQDHCAETKHSINVTHQN---LQRLATQAES 350
            V  AT  + S+A++VS    SA+  + Q++    E KH   +  +N   +  LA +   
Sbjct: 432 QVATATTELSSSAQQVSM---SANDALAQIKQADQEAKHMRAIAEENKHTILALAEEVAK 488

Query: 351 AALTTLKLSDQAQQVGQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRAL 410
           A     K+   +  +G ++  I GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+L
Sbjct: 489 AGQVINKVHSDSAAIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSL 548

Query: 411 SARTQRATQQIQTSIDTMLSTIEAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDM 470
           ++RTQ +T++IQ  I+ +    +     +   R Q   C Q        L+ +   +   
Sbjct: 549 ASRTQVSTREIQQMIEVLQQGAQQAVAAMDMGRAQANACVQKTEQANLALETISQSVHKA 608

Query: 471 LRVIGEVASAAQHQRELTCEVNQHIHSIASV-------ATQNSAATHTVEQLAMAMSGKV 523
                 +A AAQ Q  ++ +V++ +  IA++       A Q + ++H V +LA  +   V
Sbjct: 609 YDAGTHIAHAAQEQNLVSQQVSEKLEHIAAISEETAIGADQTAQSSHQVAKLAEELQASV 668

Query: 524 AEF 526
            EF
Sbjct: 669 GEF 671