Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  142 bits (357), Expect = 4e-38
 Identities = 95/316 (30%), Positives = 164/316 (51%), Gaps = 15/316 (4%)

Query: 222 QNEYDSISRLIYSGADAFSVADYHLKMASARIRTILGRMMDSARPLGELANQLHLTTQEV 281
           Q E D   RL   G D  +   +   + + +I  ++G +    + L   A  L L  +E 
Sbjct: 232 QGEGDLSQRLSTQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEES 291

Query: 282 HQALAAQNSNIQAVTQATDAVESAAERVSSHTHSAHQLIDQVQDHCAETKHSINVTHQNL 341
           +Q+    +    +V  A + + S    ++S+T  A      V+    ++K  I+ T ++ 
Sbjct: 292 NQSAEHIHRETGSVATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDT 351

Query: 342 QRLATQAESAALTTLKLSDQAQQVGQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFA 401
           ++L  + +++   T KL   + Q+G ++  I  IAEQTNLLALNAAIEAARAG  GRGFA
Sbjct: 352 EKLVQELKASEAITQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFA 411

Query: 402 VVADEVRALSARTQRATQQIQTSIDTMLSTIEAWRGDITASRDQTEQCAQDANTTLQQLQ 461
           VVADEVRAL+ RTQ +T +IQ     ++S I+   G +  S  QT++ +++     Q+  
Sbjct: 412 VVADEVRALANRTQDSTNEIQ----KIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAG 467

Query: 462 DVECVMSDMLRVIG----EVASAAQHQRELTCEVNQHIHSIASVA-------TQNSAATH 510
                + +++  I     ++ASA + Q  +T E+N++I +I+ +          NS A  
Sbjct: 468 QAMAAILELIAHISDMNTQLASATEEQSLVTEEINRNICNISELTEVSVKANESNSRAAQ 527

Query: 511 TVEQLAMAMSGKVAEF 526
           +++ ++  MS  + +F
Sbjct: 528 SLQDISQDMSHTLGQF 543