Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  367 bits (941), Expect = e-106
 Identities = 199/502 (39%), Positives = 295/502 (58%), Gaps = 11/502 (2%)

Query: 18  SAYTPSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASM 77
           S  T S  QE+ +   D+L+STT+ +G+ITY N  F  ++G+ ADEL+G  HN VRH  M
Sbjct: 9   SKITHSNAQEIRLTPQDELISTTNTRGIITYVNQRFAEVSGYSADELIGHPHNKVRHPDM 68

Query: 78  PKAAFADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERK 137
           P AAF +MW  LK G +WRGIVKNR K+G FYWVDA+V+PI++ G + GYQSVR++ +  
Sbjct: 69  PSAAFKEMWEKLKSGQSWRGIVKNRCKNGDFYWVDAFVSPIFENGTIVGYQSVRLQPQAA 128

Query: 138 WVEIATKAYQALLAAEKAGKKIQFKLHTSLRYALLLGALMSPALAHGFQAPEQWQWLASL 197
           +V  AT  Y+ LL  +   K +      ++   +    L+   +A  F     W W   +
Sbjct: 129 YVSKATAIYRRLLHNKPIPKPLSLMQKRAVSAVVASTGLL---IAGYF-----WGWGVII 180

Query: 198 LPAGVLGL---LFRQELVRTPQQLKQWQNEYDSISRLIYSGADAFSVADYHLKMASARIR 254
             A ++GL   +F  E  R P +L   Q +YDSISR IY+GAD  S+ D+ L +  A++ 
Sbjct: 181 AGAILMGLNLAIFYDEAFRIPAKLIDMQTKYDSISRYIYAGADTSSILDFQLILLQAKMN 240

Query: 255 TILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSHTH 314
            +LGR  D A  L  +A+QL +TT++ + +L  + + ++ +  A + + S    V+ +T 
Sbjct: 241 GVLGRTQDQANQLHAIADQLVVTTEQTYASLDQEKNQLEQLASAMEEMSSTITEVAQNTQ 300

Query: 315 SAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEIGG 374
                I+   + C ++  ++    Q +++LA     AA     L+ +A++V   M EI  
Sbjct: 301 RTSTSINTAYELCLKSSANMKANTQKVEQLAKSVADAANNANLLNQEAERVASAMGEIDS 360

Query: 375 IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTIEA 434
           IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALS+RTQ +T  I  S+D M S + A
Sbjct: 361 IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSSRTQLSTNSISQSVDKMFSMLNA 420

Query: 435 WRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCEVNQH 494
           W  ++  SR   E+CA D  T+ + +  +   +S++     + A AA  QR++  E+  +
Sbjct: 421 WAKEMEQSRQHAERCANDIQTSAENVNTIYQEVSEIHTFAQQNAVAADQQRQVVHEITNN 480

Query: 495 IHSIASVATQNSAATHTVEQLA 516
           IH I   +++N AATH +   A
Sbjct: 481 IHFITQSSSENLAATHQIGDAA 502