Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  155 bits (391), Expect = 6e-42
 Identities = 94/281 (33%), Positives = 148/281 (52%), Gaps = 4/281 (1%)

Query: 252 RIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSS 311
           R+  ++ RM + A  L   A     +  +  Q +  Q   +  V  A   + SA E ++S
Sbjct: 347 RLHGMISRMHNIAGQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEIAS 406

Query: 312 HTHSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTE 371
           +     Q            +  +  + Q+++ LA + ++A     +L++ +Q++  ++  
Sbjct: 407 NAEHTAQTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILLT 466

Query: 372 IGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLST 431
           I GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LS RT  +TQ+IQ  I+T+  T
Sbjct: 467 ISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQT 526

Query: 432 IEAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCEV 491
                  +T S D  E    DAN+  + L  +   ++++  +  ++A+AA+ Q  +T E+
Sbjct: 527 AGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEI 586

Query: 492 NQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQ 532
           N++  SI  V+   S       Q AM  S ++A   A  +Q
Sbjct: 587 NRNTESIREVSENLSIEA----QSAMVQSQELAHLAASLQQ 623