Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  239 bits (611), Expect = 1e-67
 Identities = 162/491 (32%), Positives = 258/491 (52%), Gaps = 17/491 (3%)

Query: 36  LVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAAFADMWHHLKQGHAW 95
           L+STTD +  ITY N +FC +AG+  +++LG+ HN+VRH  MP  AF D+W  +++G  W
Sbjct: 20  LLSTTDTQSHITYANQSFCMVAGYTLNDMLGQTHNMVRHPYMPPQAFEDLWKTIRKGEPW 79

Query: 96  RGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVEIATKAYQALLAAEKA 155
           +GIVKNR  +G  YWVDAYV+PI   GQ+  +QSVR K  R+ ++ A  AY  L    K+
Sbjct: 80  KGIVKNRCANGDHYWVDAYVSPIMINGQVAEFQSVRTKPSREQIQRADSAYAEL---NKS 136

Query: 156 GKKIQFK--LHTSLRYALLLGALMSPALAHGFQAPEQWQWLASLLPAGVLGLLFRQELVR 213
           G     K  L    + ALL    + P L    Q      ++A  +   VL +     L R
Sbjct: 137 GHVNALKRILDMPTKLALLGLVALLPMLYLALQMGAM-GFVALAISVLVLFIGGNLILGR 195

Query: 214 TPQQLKQWQNEYDS-ISRLIYSG-ADAFSVADYHLKMASARIRTILGRMMDSARPLGELA 271
               + + +  YD+ +   IY+G +D     +  L+M ++ ++++LGR  DS   + + A
Sbjct: 196 YRALVAKAKKIYDNPLMAYIYTGQSDDLGAIELALQMQNSELKSVLGRARDSCDKVTQEA 255

Query: 272 NQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSHTHSAHQLIDQVQDHCAETK 331
                  +E+     +Q + I+ V  A   + +    +SS+   A        +      
Sbjct: 256 KVSAAKGEEIQSTSQSQLAEIEQVATAMQQMTATLVDMSSNCADAASASQMASEQTINGD 315

Query: 332 HSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEIGGIAEQTNLLALNAAIEAA 391
            ++  T  ++Q +A Q  + +    +L   ++ +G+++  I GIAEQTNLLALNAAIEAA
Sbjct: 316 KTVVSTIHSIQTMAQQLHATSKVITELEGHSKDIGRVLDVIQGIAEQTNLLALNAAIEAA 375

Query: 392 RAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTM-LSTIEAWRGDITASRDQTEQCA 450
           RAGE GRGFAVVADEVRAL+ RT  AT++I + I+ + L T +A R  +    +   +C 
Sbjct: 376 RAGELGRGFAVVADEVRALAKRTHDATKEIHSMINLLQLGTNKAVR-SMHEGVEAASECI 434

Query: 451 QDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCEVNQHIHSIASVATQNSAATH 510
             A+     L+ +   ++ +  +   +ASA + Q  +  E+N+ + ++       S  TH
Sbjct: 435 TTADLAGAALRTIREAIATITDMNHHIASAVEEQSSVANEMNRSVVNV-------SQFTH 487

Query: 511 TVEQLAMAMSG 521
           +  QL   M G
Sbjct: 488 SSHQLGCEMVG 498