Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  371 bits (953), Expect = e-107
 Identities = 200/497 (40%), Positives = 295/497 (59%), Gaps = 11/497 (2%)

Query: 23  SAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAAF 82
           S  QEV +   D+L+STTD +G+ITY N  F  ++G++A+EL+G+ HN VRH  MP AAF
Sbjct: 16  SNAQEVRLTPQDELISTTDTRGIITYVNQRFAEVSGYKAEELIGQPHNKVRHPDMPSAAF 75

Query: 83  ADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVEIA 142
            +MW  LK G +WRGIVKNR K+GGFYWVDA+V+P+++ G + GYQSVR++ +  +V  A
Sbjct: 76  KEMWEKLKSGQSWRGIVKNRCKNGGFYWVDAFVSPLFENGTIIGYQSVRIQPQAAYVSKA 135

Query: 143 TKAYQALLAAEKAGKKIQFKLHTSLRYALLLGALMSPALAHGFQAPEQWQWLASLLPAGV 202
           T  Y+ L+  +   K +        R+   + A     +A  F     W W      A +
Sbjct: 136 TDIYRRLVQNKPIPKPLSLM---QKRFVSAVVATTGLLIAGYF-----WGWGVIFAGAIL 187

Query: 203 LGL---LFRQELVRTPQQLKQWQNEYDSISRLIYSGADAFSVADYHLKMASARIRTILGR 259
           + L   +F  E  R P +L + Q +YDSISR IYSGAD  S+ D+ L +  A++  +LGR
Sbjct: 188 MSLNLAIFYDEAFRIPAKLVEMQEKYDSISRYIYSGADTSSILDFQLILLQAKMNGVLGR 247

Query: 260 MMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSHTHSAHQL 319
             D A  L  +A+QL +TT++ + +L  + + ++ +  A + + S    V+ +T      
Sbjct: 248 TQDQAHHLHAIADQLVVTTEQTYVSLDQEKNQLEQLASAMEEMSSTIAEVAQNTQLTSTS 307

Query: 320 IDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEIGGIAEQT 379
           I+   D C ++  ++    Q +++LA     AA    +L+ +A++V   M EI  IAEQT
Sbjct: 308 INTAYDLCLKSSANMKANTQKVEQLAKSVADAANNAHQLNKEAERVASAMGEIDSIAEQT 367

Query: 380 NLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTIEAWRGDI 439
           NLLALNAAIEAARAGEQGRGFAVVADEVRALS+RTQ +T  I  S+D M S + AW  ++
Sbjct: 368 NLLALNAAIEAARAGEQGRGFAVVADEVRALSSRTQLSTNSISQSVDKMFSMLNAWAKEM 427

Query: 440 TASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCEVNQHIHSIA 499
             SR   E CA D  T+ + +  +   +S++     + A AA  QR++  E+  +IHSI 
Sbjct: 428 EQSRQHAELCANDIQTSAENVNTIYQEVSEIHTFAQQNAVAADQQRQVVHEITNNIHSIT 487

Query: 500 SVATQNSAATHTVEQLA 516
             +++N AATH +   A
Sbjct: 488 QTSSENLAATHQIGDAA 504