Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  139 bits (351), Expect = 2e-37
 Identities = 94/315 (29%), Positives = 165/315 (52%), Gaps = 13/315 (4%)

Query: 222 QNEYDSISRLIYSGADAFSVADYHLKMASARIRTILGRMMDSARPLGELANQLHLTTQEV 281
           Q E D   RL   G D  +   +   + + +I  ++G +    + L   A QL L  +E 
Sbjct: 232 QGEGDLSQRLSTQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKQLMLAVEES 291

Query: 282 HQALAAQNSNIQAVTQATDAVESAAERVSSHTHSAHQLIDQVQDHCAETKHSINVTHQNL 341
           +Q+    +    +V  A + + S    ++S+T  A    + V++   +++  I+ T ++ 
Sbjct: 292 NQSAEHIHRETGSVATAVNQMLSTTHEMASNTQQAADAANSVKNQAQQSQAVIDDTVRDT 351

Query: 342 QRLATQAESAALTTLKLSDQAQQVGQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFA 401
           ++L  +  ++ + T KL   + Q+G ++  I  IAEQTNLLALNAAIEAARAG  GRGFA
Sbjct: 352 EKLVQELRASEVITQKLGQSSAQIGSILDVIRSIAEQTNLLALNAAIEAARAGSHGRGFA 411

Query: 402 VVADEVRALSARTQRATQQIQ---TSIDTMLSTIEAWRGDITASRDQTEQCAQDANTTLQ 458
           VVADEVRAL+ RTQ +T +IQ   + I   ++++           D+ +  A++A   + 
Sbjct: 412 VVADEVRALANRTQDSTNEIQKIISDIQMGVNSVMKSNSQTQTQSDELQAKAREAGNAMA 471

Query: 459 QLQDVECVMSDMLRVIGEVASAAQHQRELTCEVNQHIHSIASVA-------TQNSAATHT 511
            +  +   +SDM     ++ASA + Q  +T E+N++I +I+ +          NS A  +
Sbjct: 472 AILQLIAHISDMNT---QLASATEEQSLVTEEINRNICNISELTEVSVKANEGNSRAAQS 528

Query: 512 VEQLAMAMSGKVAEF 526
           ++ ++  MS  + +F
Sbjct: 529 LQDISQDMSHTLGQF 543



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 37/194 (19%), Positives = 75/194 (38%), Gaps = 22/194 (11%)

Query: 342 QRLATQA-ESAALTTLKLSDQAQQVGQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGF 400
           QRL+TQ  +  A      +  AQ++G ++  +  + +  +                 +  
Sbjct: 239 QRLSTQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLD--------------NDAKQL 284

Query: 401 AVVADEVRALSARTQRATQQIQTSIDTMLSTIEAWRGDITASRDQTEQCAQDANTTLQQL 460
            +  +E    +    R T  + T+++ MLST      +       T+Q A  AN+   Q 
Sbjct: 285 MLAVEESNQSAEHIHRETGSVATAVNQMLSTTHEMASN-------TQQAADAANSVKNQA 337

Query: 461 QDVECVMSDMLRVIGEVASAAQHQRELTCEVNQHIHSIASVATQNSAATHTVEQLAMAMS 520
           Q  + V+ D +R   ++    +    +T ++ Q    I S+     +       LA+  +
Sbjct: 338 QQSQAVIDDTVRDTEKLVQELRASEVITQKLGQSSAQIGSILDVIRSIAEQTNLLALNAA 397

Query: 521 GKVAEFGALSKQFA 534
            + A  G+  + FA
Sbjct: 398 IEAARAGSHGRGFA 411