Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  252 bits (643), Expect = 3e-71
 Identities = 177/530 (33%), Positives = 275/530 (51%), Gaps = 30/530 (5%)

Query: 21  TPSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKA 80
           T S   E  + ++  L+STTDLKG I Y N TF +I+ +   EL G  HNIVRH  MP A
Sbjct: 3   THSKNGEKHLSENAILLSTTDLKGNIKYVNQTFSQISEYSVAELQGSPHNIVRHGDMPSA 62

Query: 81  AFADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVE 140
           AF  +W  ++ G  W GIVKNRTK+GG+YWV+AYV P+Y+ G++  YQSVR +A  + ++
Sbjct: 63  AFKMLWERIRSGKPWMGIVKNRTKNGGYYWVNAYVAPVYENGKIHEYQSVRRQATPEQIK 122

Query: 141 IATKAYQALLAAE--KAGKKIQFKLHTSLRYALLLGALMSPALAHGFQAPEQWQWLASLL 198
            A + YQ +   +  KA KK +      +  A+L    ++  LA        +  + + L
Sbjct: 123 AAEEIYQGINQGQQPKALKKDRLGFRGKILMAMLFTIALTAYLA-------TYSPILAAL 175

Query: 199 PAGVLGLLFRQELVRTPQQLKQWQNEY--DSISRLIYSG-ADAFSVADYHLKMASARIRT 255
             G+L L     L++  Q L Q  +    D ++  +Y+G  D     D  L+     I  
Sbjct: 176 AGGLLALGLWYMLMQPFQALVQVASNIIDDPVAMGVYTGRQDEIGKLDLALRFLITEIGG 235

Query: 256 ILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSHTHS 315
           ++GRM DSA  + E +  L  T     +   +Q++     TQA  A+E  +   +  T +
Sbjct: 236 VVGRMADSASEIQEQSVNLKQTITNTWEHADSQSAQ---TTQAATAMEQMSASFAEVTDN 292

Query: 316 AHQLI-DQVQDH-CAETKHS-INVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEI 372
            H+   + V  H  A+  HS +    + + +L+ Q    +     +   +Q + Q++  I
Sbjct: 293 IHRTASEMVSSHEAAQRGHSRLETVIEAIHQLSVQVSHFSDVVQTIEQDSQAIHQVLEVI 352

Query: 373 GGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTI 432
             IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LS+RT ++T QI+  +     + 
Sbjct: 353 RAIADQTNLLALNAAIEAARAGESGRGFAVVADEVRQLSSRTSQSTSQIELIVSRFKDST 412

Query: 433 EAWRGDITASRDQTEQ---CAQDANTTLQQLQDVECVMSDMLRV---IGEVASAAQHQRE 486
           +     +TA ++Q ++    AQDA+    +L      +S + R+     + A+A   Q  
Sbjct: 413 QKATSTMTAGQEQVKRSVSLAQDASIAFGEL------LSSIARINSLSDDNAAAMTQQAS 466

Query: 487 LTCEVNQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQFAQK 536
           +  E+++ IH I+ +A Q+   T         +S    +   LS+QF Q+
Sbjct: 467 VAAEISRAIHVISDLAQQSLEQTQDAAARGDQVSRLSTKTHHLSQQFWQQ 516