Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  242 bits (618), Expect = 2e-68
 Identities = 161/486 (33%), Positives = 250/486 (51%), Gaps = 11/486 (2%)

Query: 36  LVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAAFADMWHHLKQGHAW 95
           L+STTD K  ITY N +FC +AG++   +LG  HN+VRH  MP  AF D+W  +++G  W
Sbjct: 20  LLSTTDTKSHITYANPSFCTVAGYELSGMLGLPHNMVRHPDMPPQAFEDLWKTIRKGEPW 79

Query: 96  RGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVEIATKAYQALLAAEKA 155
           +GIVKNR  +G  YWVDAYV+PI   GQ+  +QSVR K  R+ +  A  AY A L     
Sbjct: 80  KGIVKNRCANGDHYWVDAYVSPIVVNGQVAEFQSVRTKPSREQINRAEAAY-AELNKNGQ 138

Query: 156 GKKIQFKLHTSLRYALLLGALMSPALAHGFQAPEQWQWLASLLPAGVLGLLFRQELVRTP 215
            K ++  L    + ALL+   + P L    Q      ++   + A  L +     L R  
Sbjct: 139 VKALKRTLEMPTKLALLVLVALLPMLYLALQIGVV-GFVGLAISALALFIGGNLILGRYR 197

Query: 216 QQLKQWQNEYDS-ISRLIYSG-ADAFSVADYHLKMASARIRTILGRMMDSARPLGELANQ 273
             + + +  YD+ +   IY+G +D     D  L+M ++ ++++LGR  DS   + + A  
Sbjct: 198 TLVAKAKKIYDNPLMAHIYTGQSDDLGAIDLALQMQNSELKSVLGRARDSCDNVSQQAKI 257

Query: 274 LHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSHTHSAHQLIDQVQDHCAETKHS 333
                +E+     +Q + I+ V  A   + +    +SS+   A                +
Sbjct: 258 SAAKGEEIQGTSQSQLAEIEQVATAMQQMTATLGDMSSNCADAASASQMASLQTINGDKT 317

Query: 334 INVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEIGGIAEQTNLLALNAAIEAARA 393
           +  T Q++Q +A Q +  +    +L   ++ +G+++  I GIAEQTNLLALNAAIEAARA
Sbjct: 318 VVSTIQSIQAMAQQLQETSQVITELEGHSRDIGRVLDVIQGIAEQTNLLALNAAIEAARA 377

Query: 394 GEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTIEAWRGDITASRDQTEQCAQDA 453
           GEQGRGFAVVADEVRAL+ RT  AT++I T I+ +          +    D   +C   A
Sbjct: 378 GEQGRGFAVVADEVRALAQRTHDATKEIHTMINLLQQGTHKAVRSMQEGVDAAGECITTA 437

Query: 454 NTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCEVNQHIHSIASVATQNSAATHTVE 513
           +     L+ +   ++ +  +   +ASA + Q  +  E+N+ + ++       S  TH+  
Sbjct: 438 DLAGAALRTIREAITTITDMTHHIASAVEEQSSVANEMNRSVVNV-------SQFTHSSH 490

Query: 514 QLAMAM 519
           QL   M
Sbjct: 491 QLGCEM 496