Pairwise Alignments

Query, 330 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., Ribose operon repressor from Pseudomonas fluorescens FW300-N2E2

 Score =  137 bits (346), Expect = 3e-37
 Identities = 98/331 (29%), Positives = 174/331 (52%), Gaps = 8/331 (2%)

Query: 1   MASLHDVARLAGVSKSTVSRVINDEYGVKESTKIKVLKAVEQCGYMVNQVAKDLKSQKTN 60
           MA++ DVA LAG+S +TVS V+N    V E  ++KV  A+E+  Y+ + VA+ LK++ T 
Sbjct: 1   MATIKDVAALAGISYTTVSHVVNKTRPVSEEVRLKVEAAIERLDYVPSAVARSLKAKTTA 60

Query: 61  LIGVIVPRVSSHATAQGVDGLTAIFEQAGKHVLLANTHQVHAKEIEYIQIFNQKRVEGIV 120
            IG++VP   +   A+   G+    E+ G  V+L N+     K+  Y+++  +KR++G++
Sbjct: 61  TIGLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNPDKQRSYLRVLLEKRIDGLI 120

Query: 121 FYATHLDQPLVHAIQHSAVPVVLVGQDGSLYNIPS-IVHDDHRVG-FEAGQRLVKAGCKQ 178
           F +   D  L   + +   P+V+V  D  L  + + +V  DH  G + A + L++ G + 
Sbjct: 121 FASAGGDVGLAEGLSNVRTPMVIV--DRGLEGVDADLVRIDHEYGAYLATRHLLELGHRD 178

Query: 179 IGFIGVQSDDIAVDVLRSQGLQQALGFHQQTLLFH--ARGNFSIESGYQMAKQAYLDYPQ 236
           I FIG  + + +V  +R  G  +AL      L        +F+   GY+ A Q  +  P 
Sbjct: 179 IAFIGGPA-NTSVAQMRLAGYCRALKEAGIELPVERMLESDFTSTGGYRAAAQLLVQQPP 237

Query: 237 LDGLFCATDRLAVGAIKALQELGVHVGQQVKLLGVGNDELAYVSNPPLSTFNYAFDKAGE 296
              +F A D + +G ++A  E  V V  ++ ++G  + +++    P L+T   +  + GE
Sbjct: 238 -SAIFAANDMIGIGVLRAAAERNVRVPSELSVIGFDDIQMSRYVYPALTTVGQSILQLGE 296

Query: 297 NAAKMLLERIAGRGQEMSKVVLTFQNIQRET 327
            AA++LL RIA  G    + ++T   + RE+
Sbjct: 297 MAAEVLLRRIATPGLATEQRIVTPSIVLRES 327