Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 78/279 (27%), Positives = 129/279 (46%), Gaps = 6/279 (2%)

Query: 49  QGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQA 108
           Q  L  + SG+V+   VD    VKK Q L+ +  +       A Q  + +A A+ ++   
Sbjct: 6   QSDLGFRVSGKVLERLVDAGQAVKKGQPLMRLDPIDLGLQARAQQEAVTAARARAKQTAD 65

Query: 109 QLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIV 168
              RYR+L   GAIS    D  +A A +A A + +A+A  + A+ + GY  + A  DG+V
Sbjct: 66  DEARYRELVAAGAISASGYDQIKAAADTAKAQLSAAEAQADVARNASGYAVLLADADGVV 125

Query: 169 TQRMVELGETVAPGTPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVRTAQGEQLKPVE 228
            + + E G+ V+PG P++R     +     ++P+  +P V   +Q T+  +    +    
Sbjct: 126 METLAEPGQVVSPGQPVVRLARAGQREAVVQLPETLRPAVGSSAQATLYGSTSGAVTARL 185

Query: 229 FSLFSYADPQSHTFKTR--LELPQNSAALVPGMWVKTEFNYGQREVLVVPSSAVLRRAEL 286
             L   AD  + TF+ R  LE    +A L   + ++      Q  VL VP +A+      
Sbjct: 186 RLLSDSADRVTRTFEARYVLEGALANAPLGSTVTLRIAEGVAQGPVLQVPIAALYDPGNG 245

Query: 287 SAVYRVNNGQRALNPVRLGQVYG---DYVEVLSGLELGD 322
           + V+ V +G+ A    R  QV G   D   V   L +G+
Sbjct: 246 TGVW-VIDGEPAKVTWRPVQVLGLSDDAARVAGRLNVGE 283