Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score = 96.3 bits (238), Expect = 1e-24
 Identities = 86/296 (29%), Positives = 127/296 (42%), Gaps = 17/296 (5%)

Query: 42  GVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATA 101
           G V  ++   +  Q  G +  L V     VKK  +L  I      A+LD A+AQL  + A
Sbjct: 59  GTVLSLHSVVIRPQIDGILTRLLVKEGQLVKKGDLLATIDDRSIRASLDQARAQLGESQA 118

Query: 102 QNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNIT 161
           Q   AQ  L RY+ L     +SK   D  +A  +   A  +  QAA++ A+  L YT I 
Sbjct: 119 QLAVAQVNLKRYKLLSVDDGVSKQTYDQQQALVKQLKATAQGNQAAIDSAQVQLSYTQIR 178

Query: 162 APYDGIVTQRMVELGE--TVAPGTPLLRGFSLDELRVETEIPQRYQP----YVADVSQFT 215
           +P  G V  R V+ G     +    L     +D + VE  +PQ+  P     +A   Q  
Sbjct: 179 SPVSGRVGIRNVDEGNFLRTSDAEGLFTVTQIDPIAVEFSLPQQMLPTLQRLIAAPEQAL 238

Query: 216 VRT------AQGEQLKPVEFSLF-SYADPQSHTFKTRLELPQNSAALVPGMWVKTEFNYG 268
           V+       A GE L     SL  +  +  + T + + E    +  L PG  V  +    
Sbjct: 239 VKAYLGADGASGELLGEGRLSLIDNQINANTGTLRAKAEFDNAAQRLWPGQLVTLKIQTA 298

Query: 269 -QREVLVVPSSAVLRRAELSAVYRVNNGQRALNPVRLGQVYGDY-VEVLSGLELGD 322
             ++ LVVP S V R  E   VYR+   +    PV +  VY D  + ++ G+  GD
Sbjct: 299 LDKDALVVPPSVVQRGLEQHFVYRIKGDKVESVPVVM--VYQDSDIHIIKGVNAGD 352