Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 76/304 (25%), Positives = 132/304 (43%), Gaps = 24/304 (7%)

Query: 42  GVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATA 101
           G V P+N  +L ++  G +V L  +    VKK  +L  I       AL  A+  L    A
Sbjct: 76  GSVTPLNTVNLRSRVGGELVELRFEEGQRVKKGDLLAVIDPRPYKVALQQAEGTLQQNRA 135

Query: 102 QNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNIT 161
           Q + AQ    RYR LF   +I+K  +D+ EA        + + QA+V +A+ +L +T I 
Sbjct: 136 QLKNAQVDFERYRGLFADDSIAKQTLDTQEALVSQYQGTLAANQASVNEARLNLEFTQIR 195

Query: 162 APYDGIVTQRMVELGETVAPG--TPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVRTA 219
           +P DG V  R +++G  VA    TPL+       + +   +P+       D+     R  
Sbjct: 196 SPIDGRVGLRQLDVGNLVAANDTTPLVVITQTQPMSISFTLPE------GDLLPVLTRYR 249

Query: 220 QGEQL--------------KPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEF 265
           QG++L              + +  S+ +  D  + T + +         L+P  +V    
Sbjct: 250 QGDKLAVQIWDRGEKLMFGEGLLESIDNQIDATTGTLRLKARFDNEQELLIPNQFVNVRL 309

Query: 266 NYGQ-REVLVVPSSAVLRRAELSAVYRVNNGQRA-LNPVRLGQVYGDYVEVLSGLELGDV 323
                 + +++PS+A+   +  +  Y V    +  L  ++ G   G+   VL GLE+G+ 
Sbjct: 310 RVETLSDAVLIPSAALQFGSRGTFAYVVGEDNKVQLRLLKAGPSNGETTVVLEGLEVGER 369

Query: 324 VATQ 327
           V  +
Sbjct: 370 VVME 373