Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  103 bits (257), Expect = 7e-27
 Identities = 83/317 (26%), Positives = 151/317 (47%), Gaps = 19/317 (5%)

Query: 25  ERFTVKTELISQIV----ELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEI 80
           ER  + TE++ Q         GV+QP  + +L  + +GR+   + ++ D V+K  +L  +
Sbjct: 37  ERPVLFTEIVDQRSASHGRFAGVIQPQYEVALGFRVAGRLASRHAEIGDRVRKGDLLATL 96

Query: 81  SAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAA 140
               Q   L A QA+L  A +  ++A+ +L RY+QL+ +G  S+ +MD  +   R+ DA 
Sbjct: 97  EPGDQQHRLRARQAELGKAQSAWQQARDELTRYQQLYERGIGSRARMDQLDNDLRTQDAL 156

Query: 141 VKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEI 200
              A+ AV+QA + + YT+++A +DG++T    E+G+ +A G  ++     D      ++
Sbjct: 157 RNQARVAVQQAGDHVSYTHLSAEFDGLITGWQAEVGQVMATGQAVVSLARPDSREAVVDL 216

Query: 201 P-----QRYQ-PYVADVSQFTVRTAQGEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAA 254
           P     +R++   ++ +++     A   QL P         + ++ T + RL L   + +
Sbjct: 217 PLGSLDERHRIRVISQINEQLSVAADVRQLAP-------QINAETRTQRVRLALQNPADS 269

Query: 255 LVPGMWVKTEFNYGQREVLVVPSSAVLRRAELSAVYRVNNGQRALNP--VRLGQVYGDYV 312
              G  V  E +        +P SAVL+R     V+ ++     L P  V++    G  V
Sbjct: 270 FRLGSTVTVEISGDAPAFHELPGSAVLQRDGTYQVWVIDPTTSTLVPRAVQVLARSGSTV 329

Query: 313 EVLSGLELGDVVATQAV 329
            V   L  G+ V T  V
Sbjct: 330 RVSGALHEGEKVVTAGV 346