Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 108/364 (29%), Positives = 166/364 (45%), Gaps = 41/364 (11%)

Query: 2   KALSWSIALVLASS-AYAQN--QDSNERFTVKTEL--ISQIVELDGVVQPVNQGSLAAQT 56
           K L   + LVLA+  AY+    + + E  T K E   I   V   GV+Q + Q  + AQ 
Sbjct: 8   KVLIVVVLLVLAAGIAYSVQSPEKAPEYLTAKVERTDIENSVLASGVLQGIKQVDVGAQV 67

Query: 57  SGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQ-------AQLASATAQNREAQAQ 109
           SG++  L V++ D VK+ Q L EI  V     L  +Q       AQ  +A AQ ++A+A 
Sbjct: 68  SGQLKSLKVNLGDKVKQGQWLAEIDPVVLQNTLRQSQVNEQNLIAQKDAAVAQLKDAKAI 127

Query: 110 LNRYRQLFPKGAISKDQMDSAE-------ARARSADAAVKSAQAAVEQAKESLGYTNITA 162
             RY+QL    AIS+   D+A+       A  RS +A V+ A+  +E A+ +LGYT I A
Sbjct: 128 YQRYKQLRADDAISQKDFDTAQSDFEVRSANLRSLEAQVRDARIQIETARINLGYTRIVA 187

Query: 163 PYDGIVTQRMVELGETVAPG--TP-LLRGFSLDELRVETEIPQRYQPYVADVSQ--FTV- 216
           P  G V   + + G+TV     TP +L+   LD + V+ ++ +    ++    +  FT+ 
Sbjct: 188 PISGDVVGIVTQEGQTVIASQLTPVILKLADLDTMTVKAQVSEADVIHITPGQEVYFTIL 247

Query: 217 ---RTAQGEQLKPVEFSLFSYADPQSHT---------FKTRLELPQNSAALVPGMWVKTE 264
                    +LK  E +  ++ D QS T         +    ++P     L   M  +  
Sbjct: 248 GDAEKRYYAKLKGTEPAPQNFLDAQSSTASKPNSAVFYNALFDVPNPDHRLRISMTAQVH 307

Query: 265 F-NYGQREVLVVPSSAV-LRRAELSAVYRV--NNGQRALNPVRLGQVYGDYVEVLSGLEL 320
                 ++VL VP +A+  +  + S   RV    GQ     V+ G      VE+ SGL  
Sbjct: 308 IVREKAKDVLTVPVAALGDKNGDGSFPVRVVDAQGQAQSRNVQTGINNNVRVEIKSGLAE 367

Query: 321 GDVV 324
           GD V
Sbjct: 368 GDQV 371