Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  100 bits (250), Expect = 5e-26
 Identities = 100/361 (27%), Positives = 148/361 (40%), Gaps = 37/361 (10%)

Query: 1   MKALSWSIALVLASSAYAQNQDSN--------ERFTVKTELISQIVELDGVVQPVNQGSL 52
           M A++   AL L+     Q QD          E  TV TE  + + EL G ++PV    +
Sbjct: 10  MPAVALLAALGLSGCEQKQQQDHAASTAPKEVEAITVNTESFTVVDELPGRIEPVRVAQV 69

Query: 53  AAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNR 112
            A+ +G V+    +    VK   VL +I      AAL  AQ  LA   A   E QA + R
Sbjct: 70  RARVAGIVLSRNFEEGADVKAGAVLFQIDPAPFKAALSKAQGDLARTQATLFETQATVKR 129

Query: 113 YRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRM 172
           Y  L    A+S+   D+A +  ++A AA +SA+A VE A+ +LGY  + AP  G + + M
Sbjct: 130 YESLVEIEAVSRQTFDTARSALQNAVAAKRSAEADVETARLNLGYATVKAPISGRIGRAM 189

Query: 173 VELGETVAPG-TPLLRGF-SLDELRVETEIPQRYQPYVADVSQFTVRTAQGEQLKPVEFS 230
           V  G  V  G T LL     LD +  +   P       A+  Q      +G   K  E +
Sbjct: 190 VTEGALVGQGETTLLATIQQLDPVYADFTQP------AAEALQMRAAIQEGRLPKGGEDA 243

Query: 231 LFSYADPQSHT------------------FKTRLELPQNSAALVPGMWVKTEF-NYGQRE 271
           L    D   +T                     R         L+PGM+V+          
Sbjct: 244 LSLSVDGTDYTSTGTLLFTDVAVDRTTGQVSLRARFANPKGVLLPGMYVRVRTPQRVDSN 303

Query: 272 VLVVPSSAVLRRAELSAVYRV--NNGQRALNPVRLGQVYGDYVEVLSGLELGDVVATQAV 329
            ++VP  AV R  + +A   V   +G     PV+ G +     ++  GL+ G+ V    +
Sbjct: 304 AILVPQRAVQRSGDGAARVLVIAQDGTVEARPVKTGAMQDSRWQITEGLKAGEQVIVGNM 363

Query: 330 T 330
           T
Sbjct: 364 T 364