Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score = 94.7 bits (234), Expect = 3e-24
 Identities = 79/294 (26%), Positives = 134/294 (45%), Gaps = 18/294 (6%)

Query: 42  GVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATA 101
           G V+   + +L  +  G++    V++ D VK   +L  I A     A+ +A+A L +A  
Sbjct: 60  GSVRARTEMNLGFRVGGKITERLVNIGDRVKPGDILARIDATDYRLAVTSAEANLLAAEK 119

Query: 102 QNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNIT 161
           Q +       R  QLF K   S+ Q+D A      A +   +A +++ QAK  + YT++ 
Sbjct: 120 QVQTTALAKLRAEQLFTKSFSSQAQLDQATLLYDQAVSTRDAAASSLSQAKNQVSYTDLK 179

Query: 162 APYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVRTAQG 221
           A  +GIVT    ++G+ V  GTP++      E  VE  +P+       DV++F      G
Sbjct: 180 ADQNGIVTAVNADIGQVVGTGTPVVTVAVDGEKEVEIAVPE------IDVTEFKPGKPVG 233

Query: 222 EQLKPVEF--------SLFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEFNYGQREVL 273
            +    +          +   AD +S TF  R+ LP +   L+ GM    E        L
Sbjct: 234 VRFWSNDMLVLDGHVREVSGSADQRSRTFSVRVSLPNDERVLL-GMTATVEAAAASSAPL 292

Query: 274 V-VPSSAVLRRAELSAVYRVNNGQRALN--PVRLGQVYGDYVEVLSGLELGDVV 324
           V +P SA+ ++   + V+ V+     ++  P++L     + V V+ GL  GD+V
Sbjct: 293 VSIPLSALSKKDGQNIVWIVDRDFSTVHARPIKLADFADNGVRVVDGLGAGDLV 346