Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., AcrA/AcrE family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  263 bits (673), Expect = 3e-75
 Identities = 136/289 (47%), Positives = 191/289 (66%), Gaps = 1/289 (0%)

Query: 40  LDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASA 99
           LD +++PV   +++AQTSGR++ ++ DVND V     LLEI++ +Q AAL AA+A  A A
Sbjct: 38  LDALIEPVQAATVSAQTSGRILKIHFDVNDTVPAGAALLEITSKEQGAALAAAEADYARA 97

Query: 100 TAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTN 159
            A N EAQA L RY+ LFPKGAIS+   D A ARA+S++ AV +A AA+ +A+ESL YT 
Sbjct: 98  LAVNTEAQATLRRYQDLFPKGAISRGTFDEAIARAKSSEQAVTAANAAIVRARESLSYTT 157

Query: 160 ITAPYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVRTA 219
           + AP+ G++T+R VE GETV PG PLL GFS D++R   ++P RY   +      +V  A
Sbjct: 158 VYAPFGGVLTERHVEQGETVNPGQPLLSGFSADKMRAVMQVPGRYLAALKAAGAVSVELA 217

Query: 220 QGEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEFNYGQREVLVVPSSA 279
            G  +   + ++FS+A PQSH+F+ R++LP N A + PG W K  F  G+R +L+VP  A
Sbjct: 218 DGRSIDSNQLTIFSFASPQSHSFQVRIQLPDN-ADVQPGSWAKASFVQGKRRMLLVPQRA 276

Query: 280 VLRRAELSAVYRVNNGQRALNPVRLGQVYGDYVEVLSGLELGDVVATQA 328
           ++ R EL+ VY +   +  L  VRLG+  GD V+VLSGL  GDV+A  A
Sbjct: 277 IVSRGELTGVYMMQGDKAVLTQVRLGKQQGDRVQVLSGLNDGDVIAADA 325