Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., acriflavin resistance periplasmic protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 89.0 bits (219), Expect = 2e-22
 Identities = 83/316 (26%), Positives = 140/316 (44%), Gaps = 24/316 (7%)

Query: 28  TVKTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSA 87
           T++ + ISQ  +  GVV+   +  LA + SG++  + V   D V + Q L  +   +   
Sbjct: 44  TLQPQGISQ-TQFTGVVRSAERAELAFKQSGKLASMTVQEGDKVSRGQTLATLDDAELKT 102

Query: 88  ALDAAQAQLASATAQNREAQAQLNRYRQLFPKG-AISKDQMDSAEARARSADAAVKSAQA 146
           AL++A  +        ++AQ   +R  ++F    AIS+  +D  + +   A   V  AQ 
Sbjct: 103 ALNSANVEF-------KQAQTDFDRGNKIFSTSQAISRSDLDQLKVKRDLAANKVAKAQ- 154

Query: 147 AVEQAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQR--Y 204
                 + L   ++ AP+DG V Q++V    TV P  P+    +   L V   +P +   
Sbjct: 155 ------QDLANASLNAPFDGTVAQKLVNNFATVQPNQPVYVVHNPANLEVMINVPGKLFL 208

Query: 205 QPYVADVSQFTVRTAQGEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAA-LVPGMWVK- 262
           +P     +   +    G++         + ADP S T++  L     SAA L+PGM  K 
Sbjct: 209 EPNAGQRAVAEIEGLAGQRFGLTYRYYAADADPVSQTYQVVLGFDDPSAANLLPGMSAKV 268

Query: 263 --TEFNYGQREVLVVPSSAVL-RRAELSAVYRVN-NGQRALNPVRLGQVYGDYVEVLSGL 318
                +  Q + L+VP  AV+        V+ VN +   A   +R+G + G+ ++V  GL
Sbjct: 269 YPVMDSAAQNQHLLVPVDAVVPSNTGSQFVWLVNADSSVAKRSIRVGNILGNQIQVTEGL 328

Query: 319 ELGDVVATQAVTAKGE 334
             GD +    V A  E
Sbjct: 329 SPGDKIVVAGVHALAE 344